Hi, Am 27.05.2013 um 15:53 schrieb Fan Dong:
> Hope someone can help with this. We submitted hundreds of jobs using > something similiar to qsub -pe my_pe 4 my_job.sh. We found that there is > always a nodes with 8 slots empty at any time that we checked. A screenshot > is pasted here, either comp03 or comp04 is idle while there are bunch of jobs > waiting in the queue. Ideally both comp03 and comp04 should have 2 tasks > running all the time. Given our setup we expect 6 jobs running > simultaneously but there are only 4 jobs instead. These are long-run jobs > that each of them may last 4 hours so we checked the queue plenty of times > and find this behaviour. > > Can someone shed some light on this? > > --------------------------------------------------------------------------------- > [email protected] BIP 0/4/6 2.45 linux-x64 > 1344 0.55500 npairs_run anita r 05/27/2013 01:20:46 4 > > --------------------------------------------------------------------------------- > [email protected] BIP 0/4/6 2.71 linux-x64 > 1343 0.55500 npairs_run anita r 05/27/2013 00:37:16 4 > The above machines have only 6 slots. What is the definition of your PE - maybe they don't fit in the allocation rule? $ qconf -sp my_pe -- Reuti > --------------------------------------------------------------------------------- > [email protected] BIP 0/8/8 5.46 linux-x64 > 1345 0.55500 npairs_run anita r 05/27/2013 02:17:01 4 > > 1346 0.55500 npairs_run anita r 05/27/2013 03:11:31 4 > > --------------------------------------------------------------------------------- > [email protected] BIP 0/0/8 0.02 linux-x64 > > ############################################################################ > - PENDING JOBS - PENDING JOBS - PENDING JOBS - PENDING JOBS - PENDING JOBS > ############################################################################ > 1347 0.55500 npairs_run anita qw 05/23/2013 16:37:25 4 > > 1348 0.55500 npairs_run anita qw 05/23/2013 16:37:25 4 > > 1349 0.55500 npairs_run anita qw 05/23/2013 16:37:25 4 > > 1350 0.55500 npairs_run anita qw 05/23/2013 16:37:25 4 > > 1351 0.55500 npairs_run anita qw 05/23/2013 16:37:25 4 > > 1352 0.55500 npairs_run anita qw 05/23/2013 16:37:25 4 > > 1353 0.55500 npairs_run anita qw 05/23/2013 16:37:25 4 > > 1354 0.55500 npairs_run anita qw 05/23/2013 16:37:25 4 > > > > > On 05/17/2013 08:00 AM, [email protected] wrote: >> Send users mailing list submissions to >> >> [email protected] >> >> >> To subscribe or unsubscribe via the World Wide Web, visit >> >> https://gridengine.org/mailman/listinfo/users >> >> or, via email, send a message with subject or body 'help' to >> >> [email protected] >> >> >> You can reach the person managing the list at >> >> [email protected] >> >> >> When replying, please edit your Subject line so it is more specific >> than "Re: Contents of users digest..." >> >> >> >> Today's Topics: >> >> 1. Where do the factors for np_load_short come from? >> (Tim Landscheidt) >> 2. Re: Where do the factors for np_load_short come from? (Reuti) >> 3. Re: Where do the factors for np_load_short come from? >> (Tim Landscheidt) >> 4. Re: Where do the factors for np_load_short come from? (Reuti) >> >> >> >> _______________________________________________ >> users mailing list >> >> [email protected] >> https://gridengine.org/mailman/listinfo/users > > _______________________________________________ > users mailing list > [email protected] > https://gridengine.org/mailman/listinfo/users _______________________________________________ users mailing list [email protected] https://gridengine.org/mailman/listinfo/users
