Hi, Am 23.10.2013 um 07:26 schrieb Jyothsna Prabhukumar:
> Hi, > > I'd installed the gridengine packages using apt-get on ubuntu. I did not > compile it from source. I have no clue what the maintainers of Ubuntu are doing there. Is there a Ubuntu mailing list about the package management where you can ask? > SGE_ROOT which is set to /var/lib/gridengine/ does not contain the scripts > bin/arch and bin/arch_variables. > Hence the scripts within mpich2-mpd : ./aimk and install.sh fail. They should be in $SGE_ROOT/util anyway. > Regarding the PE: the startup and shutdown config uses the helper scripts > provided in the same directory. Will these work without first running the > scripts mentioned above? > > I'm not entirely sure what I should be doing at this point - should i instead > start anew and compile OGE using the source tar? No, as you are using MPICH-3 you don't need the mpd-startup from my Howto any longer at all - did you read the updated version I pointed to? Only a PE (with whatever allocation_rule you prefer) like you have to use during job submission: $ qconf -sp mpich3 pe_name mpich3 slots 999 user_lists NONE xuser_lists NONE start_proc_args NONE stop_proc_args NONE allocation_rule $fill_up control_slaves TRUE job_is_first_task TRUE urgency_slots min accounting_summary FALSE (yes, the same like for Open MPI, you could even call it "orte" instead of "mpich3") -- Reuti > (I have got mpich-3 installed on all nodes of the cluster. ) > > Thanks in advance. > > Regards, > Jyothsna > > > On Mon, Oct 21, 2013 at 6:46 PM, Reuti <[email protected]> wrote: > Hi, > > Am 21.10.2013 um 14:38 schrieb Jyothsna Prabhukumar: > > > I have open grid engine and mpich2 installed on my cluster. I have > > downloaded the mpich2 integration scripts and followed the instructions as > > mentioned. However, while trying to run ./aimk, the script exits out with > > an error - > > > > the file \/var/lib/gridengine/util/arch does not exist > > please set \/var/lib/gridengine and call this script again. > > ( my SGE_ROOT is set to /var/lib/gridengine. ) > > The OGE version is not actual: > http://arc.liv.ac.uk/SGE/howto/mpich2-integration/mpich2-integration.html > > Which version of MPICH2 are you using? When you start with a new development > it would even be good to move directly to MPICH3. Using MPICH2 version 1.3 or > higher there is no special setup necessary any longer - just a created PE and > it will detect automatically that it's running under SGE and use Hydra > startup. > > -- Reuti > > NB: Under which shell are you working as /bin/sh alternative? The \ should > avoid that the following variable is expanded, i.e. it should print $SGE_ROOT > and not \/var/lib/gridengine/util/arch > > > > Since the directory structure of OGE is different from SGE, should I also > > download the SGE installation file from the website.? > > > > Im quite new to both OGE and MPICH and was wondering if someone could point > > me in the right direction regarding the integration process. > > > > Both MPICH2 and OGE are installed successfully. I have run sample programs > > on both. > > > > Thanks > > Jyothsna > > > > > > _______________________________________________ > > users mailing list > > [email protected] > > https://gridengine.org/mailman/listinfo/users > > _______________________________________________ users mailing list [email protected] https://gridengine.org/mailman/listinfo/users
