We're getting a really odd effect when trying to submit a script which merges
STDIN and STDERR to qsub. It looks like something is removing characters from
the command and the data is being sent into a file called 1 instead of coming
out of STDIN. A simple example is shown below:
[andrewss@rocks1 Bug]$ more broken.sh
#!/usr/bin/bash
echo "Hello" 2>&1
[andrewss@rocks1 Bug]$ qsub -cwd -V broken.sh
Your job 201139 ("broken.sh") has been submitted
[andrewss@rocks1 Bug]$ ls -ltr
total 78
-rwxr-xr-x 1 andrewss bioinf 33 Jul 8 09:33 broken.sh
-rw-r--r-- 1 andrewss bioinf 0 Jul 8 09:35 broken.sh.e201139
-rw-r--r-- 1 andrewss bioinf 84 Jul 8 09:35 broken.sh.o201139
-rw-r--r-- 1 andrewss bioinf 8 Jul 8 09:35 1
[andrewss@rocks1 Bug]$ more 1
Hello 2
It looks like something is eating the & so the command which is being run is
simply:
echo Hello 2>1
Any idea why this might be happening or suggestions for a work round?
Thanks
Simon.
The Babraham Institute, Babraham Research Campus, Cambridge CB22 3AT Registered
Charity No. 1053902.
The information transmitted in this email is directed only to the addressee. If
you received this in error, please contact the sender and delete this email
from your system. The contents of this e-mail are the views of the sender and
do not necessarily represent the views of the Babraham Institute. Full
conditions at: www.babraham.ac.uk<http://www.babraham.ac.uk/terms>
_______________________________________________
users mailing list
[email protected]
https://gridengine.org/mailman/listinfo/users
