What was the "grid reconfiguration"? On 06/08/2015 11:42 AM, Dan Hyatt wrote:
We are running a binary program called metaanalysis, which the user says was working prior to a grid reconfiguration. qsub -cwd -b y /dsg_cent/bin/metal < c22srcfile.txt > c22SBP.log This starts, runs, creates the logs, and then fails to create the data files qsub -cwd -b y /dsg_cent/bin/metal < c22srcfile.txt > c22SBP.log -rw-rw-r-- 1 aldi genetics 8523209 Jun 8 09:53 c22GENOA.SBP.EA.M1.csv -rw-rw-r-- 1 aldi genetics 8660667 Jun 8 09:53 c22FamHS.SBP.ea.M1.csv -rw-rw-r-- 1 aldi genetics 6025412 Jun 8 09:53 c22HYPERGEN.SBP.EA.M1.csv -rw-rw-r-- 1 aldi genetics 2061 Jun 8 09:53 c22srcfile.txt -rw-rw-r-- 1 dhyatt genetics 43 Jun 8 13:40 c22SBP.log -rw-r--r-- 1 dhyatt genetics 0 Jun 8 13:40 metal.e1043 -rw-r--r-- 1 dhyatt genetics 2743 Jun 8 13:40 metal.o1043 [dhyatt@blade5-2-1 c22 the control/output file indicates everything runs there are .o and .e files, but no data The command line works fine, and creates the data files. But I need to run large jobs on the queue -rw-rw-r-- 1 aldi genetics 8523209 Jun 8 09:53 c22GENOA.SBP.EA.M1.csv -rw-rw-r-- 1 aldi genetics 8660667 Jun 8 09:53 c22FamHS.SBP.ea.M1.csv -rw-rw-r-- 1 aldi genetics 6025412 Jun 8 09:53 c22HYPERGEN.SBP.EA.M1.csv -rw-rw-r-- 1 aldi genetics 2061 Jun 8 09:53 c22srcfile.txt -rw-rw-r-- 1 dhyatt genetics 8177082 Jun 8 13:39 METAANALYSIS1.TBL -rw-rw-r-- 1 dhyatt genetics 1054 Jun 8 13:39 METAANALYSIS1.TBL.info -rw-rw-r-- 1 dhyatt genetics 10487038 Jun 8 13:39 METAANALYSIS2.TBL -rw-rw-r-- 1 dhyatt genetics 1316 Jun 8 13:39 METAANALYSIS2.TBL.info -rw-rw-r-- 1 dhyatt genetics 5030 Jun 8 13:39 c22SBP.log any thoughts? Dan _______________________________________________ users mailing list [email protected] https://gridengine.org/mailman/listinfo/users
-- Alex Chekholko [email protected] _______________________________________________ users mailing list [email protected] https://gridengine.org/mailman/listinfo/users
