It works! thank you very much. By the way, I wan to cancel or kill the process OMA in all nodes. I tried with "qdel OMA" and only works in the master node, the rest of the process keep running in the.slaves nodes.
2015-09-02 20:27 GMT-03:00 MacMullan, Hugh <[email protected]>: > Try '-b y' option (and '-j y', might as well) to your qsub command, as > it's a binary (I presume), not a job script. > > > > On Sep 2, 2015, at 4:31 PM, Dimar Jaime González Soto < > [email protected]> wrote: > > Hi every one, I have some issues trying to run OMA standalone ihttp:// > omabrowser.org/standalone/). I set up a grid engine network with 4 > nodes. It seems to be running well using this script running qsub -t 1-57 > -cwd script.sh: > #$ -cwd > #Merge the standard out and standard error to one file > #$ -j y > /bin/echo Here I am: `hostname`. Sleeping now at: `date` > /bin/echo Running on host: `hostname`. > /bin/echo In directory: `pwd` > /bin/echo Starting on: `date` > # Send mail at submission and completion of script > #$ -m be > #$ -M deadline@kronos > time=60 > if [ $# -ge 1 ]; then > time=$1 > fi > sleep $time > > echo Now it is: `date` > > which generate results like: > > Here I am: ubuntu-node9. Sleeping now at: Wed Sep 2 17:11:44 CLT 2015 > Running on host: ubuntu-node9. > In directory: /home/compartido2/andres/open_reading > Starting on: Wed Sep 2 17:11:45 CLT 2015 > Now it is: Wed Sep 2 17:12:47 CLT 2015 > > the same for the rest of out files. > > Until here the things seem to be ok. The problem is when I try to run the > program OMA: > > qsub -t 1-57 -cwd /usr/local/OMA/bin/OMA > > which generate 57 files OMA.e31.* and 57 files OMA.o31.*. > > the OMA.e* files show: > > Illegal variable name: > > and the OMA.o* files show: > > Warning: no access to tty (Bad file descriptor). > Thus no job control in this shell. > > The process OMA without parallelization run ok. > > Any help would be great. > > cheers. > > -- > Atte. > > Dimar González Soto > Ingeniero Civil en Informática > Universidad Austral de Chile > > > _______________________________________________ > users mailing list > [email protected] > https://gridengine.org/mailman/listinfo/users > > -- Atte. Dimar González Soto Ingeniero Civil en Informática Universidad Austral de Chile
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