Thanks Daniel, I now have the C program being run when I run qsub w/the -m aebs
-M william.l...@cshs.org
command line options.
However, when I look at the parameters being passed to the C program via
main(int argc, char** argv)
FILE *outfile; /*output file outfile for debugging*/
outfile = fopen("out.txt","wt");
if (outfile == NULL){
fprintf(stderr, "\nCouldn't open file out.txt\n");
}
fprintf(outfile,"argc = %d\n", argc);
for (i = 0; i < argc; i++)
fprintf(outfile,"argv[%d] = \"%s\"\n", i, argv[i]);
fclose(outfile);
I'm getting:
argc = 4
argv[0] = "mail"
argv[1] = "-s"
argv[2] = "Job 203 (mpirun) Aborted"
argv[3] = "william.l...@cshs.org"
Why isn't the body of the message being passed as an argument? I'm not seeing a
message body
that has the statistics of the job (i.e. start time, end time, exit code etc.).
Is there a C SGE API where I could directly query the SGE mySQL DB and get the
start time and
end time of a job based on the job number parsed from the subject?
-Bill L.
________________________________
From: users-boun...@gridengine.org [users-boun...@gridengine.org] on behalf of
Daniel Gruber [dgru...@univa.com]
Sent: Tuesday, October 20, 2015 12:37 AM
To: Lane, William
Cc: users@gridengine.org
Subject: Re: [gridengine users] Trying to code C program to process SGE
job-status email
Hi Bill,
You changed the global configuration (qconf -mconf or qconf -mconf global).
This is most likely overridden by the host local configuration.
Try with changing it in the host local configuration (qconf -mconf <hostname>).
You are right it takes a few seconds that the changes are propagated but
it is done automatically.
Daniel
Am 20.10.2015 um 09:24 schrieb Lane, William
<william.l...@cshs.org<mailto:william.l...@cshs.org>>:
I've been trying to code a C program to process the SGE job-status email to
determine if a job failed due to exceeding the h_rt limitation of a defined
queue.
I have a defined queue short.q w/a h_rt runtime limit of 9 secs.
I modified, via qconf -mconf the mailer line as follows:
execd_spool_dir /opt/sge/default/spool
mailer /usr/sbin/SGEProcessEmail.out
xterm /usr/bin/xterm
However when I run my linpack test benchmark (the runtime of which
exceeds a minute), I'm still getting email as if the mailer line was reading
/usr/sbin/sendmail. My binary /usr/sbin/SGEProcessEmail.out isn't getting
executed
at all, even though it has world rwx privileges set.
When I test the code from a command-line it works as expected.
Do I have to somehow propagate these changes to the exechost/compute nodes?
Thank you in advance.
-Bill L.
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