> Am 22.12.2016 um 03:15 schrieb John_Tai <[email protected]>:
>
> I wrote a script that checks path and calls the tool:
>
> echo "HERE: `hostname`"
> env |grep -i ^path
> which virtuoso
> virtuoso
>
> This is the output:
>
> HERE: ibm038
> PATH=/usr/kerberos/bin:/tmp/210.1.pc.q:/tools/cadence/virtuoso/IC616.500.12_20150709/tools/dracula/bin:/tools/cadence/virtuoso/IC616.500.12_20150709/tools/dfII/bin:/tools/cadence/virtuoso/IC616.500.12_20150709/tools/bin:/tools/cadence/virtuoso/IC616.500.12_20150709/bin:/home/sge/sge8.1.9-1.el5/bin:/home/sge/sge8.1.9-1.el5/bin/lx-amd64:/bin:/usr/bin:/usr/local/bin:/usr/X11R6/bin:/home/johnt/bin:.:
> which: no virtuoso in
> (/usr/kerberos/bin:/tmp/210.1.pc.q:/tools/cadence/virtuoso/IC616.500.12_20150709/tools/dracula/bin:/tools/cadence/virtuoso/IC616.500.12_20150709/tools/dfII/bin:/tools/cadence/virtuoso/IC616.500.12_20150709/tools/bin:/tools/cadence/virtuoso/IC616.500.12_20150709/bin:/home/sge/sge8.1.9-1.el5/bin:/home/sge/sge8.1.9-1.el5/bin/lx-amd64:/bin:/usr/bin:/usr/local/bin:/usr/X11R6/bin:/home/johnt/bin:.:)
> ./try.sh: line 8: virtuoso: command not found
Ok, so the PATH is there. But is the location shared? Can you check this in the
job script at execution time:
for LOCATION in ${PATH//:/ }; do if [ ! -d "${LOCATION}" -o ! -r "${LOCATION}"
]; then echo "$LOCATION: missing"; fi ; done
-- Reuti
> -----Original Message-----
> From: Reuti [mailto:[email protected]]
> Sent: Wednesday, December 21, 2016 7:34
> To: John_Tai
> Cc: [email protected]
> Subject: Re: [gridengine users] qsub EDA tool
>
>
>> Am 21.12.2016 um 03:52 schrieb John_Tai <[email protected]>:
>>
>> I am trying to submit an EDA tool, which is basically a binary. However the
>> path for this tool needs to be set each time, it cannot be written into my
>> ~/.cshrc.
>
> Maybe there are other files like ~/.tcshrc which are used instead? It depends
> on some compile time options of tcsh for the order they are read.
>
>
>> So for example before I start virtuoso, I will set its path:
>>
>> set path = ($VIRTUOSO_HOME/bin $path)
>>
>> Now I can type virtuoso and it will find the command.
>>
>> When I try to submit this to SGE, it cannot find the command, even
>> though the path should be exported with qsub –V
>
> As I mentioned before: -V might get confusing results in a later point when
> the job finally starts.
>
>
>> # qsub -cwd -V -j y -b y virtuoso
>> Your job 207 ("virtuoso") has been submitted # cat virtuoso.o207
>> -sh: virtuoso: command not found
>
> You can investigate this by submitting:
>
> $ qsub -V -b y env
>
> What's in the output file "env.o…"?
>
> -- Reuti
>
>>
>> What am I missing?
>>
>> Thanks
>> John
>> This email (including its attachments, if any) may be confidential and
>> proprietary information of SMIC, and intended only for the use of the named
>> recipient(s) above. Any unauthorized use or disclosure of this email is
>> strictly prohibited. If you are not the intended recipient(s), please notify
>> the sender immediately and delete this email from your computer.
>>
>> _______________________________________________
>> users mailing list
>> [email protected]
>> https://gridengine.org/mailman/listinfo/users
>
> ________________________________
>
> This email (including its attachments, if any) may be confidential and
> proprietary information of SMIC, and intended only for the use of the named
> recipient(s) above. Any unauthorized use or disclosure of this email is
> strictly prohibited. If you are not the intended recipient(s), please notify
> the sender immediately and delete this email from your computer.
>
_______________________________________________
users mailing list
[email protected]
https://gridengine.org/mailman/listinfo/users
