Hi Daniel, Will give it a try. If I am not mistaken, there should be another *done *in the code snippet.
Regards Varun On Thu, Jun 13, 2019 at 12:45 PM Daniel Povey <dpo...@gmail.com> wrote: > > for i in *tar.gz; > do > while true; do > if [ $(qstat -u $USER | wc -l) -lt 900 ]; then break; fi; > sleep 60; > done > qsub -l h_vmem=4G -cwd -j y -b y -N tar -R y -q all.q,gpu.q "tar -xzf > $i" > done > > On Thu, Jun 13, 2019 at 12:39 PM Skylar Thompson <skyl...@uw.edu> wrote: > >> We've used resource quota sets to accomplish that on a per-queue or >> per-project basis. I don't know that you can limit on jobs in RQSs but you >> certainly can on slots; the sge_resource_quota(5) man page has some >> examples. >> >> On Thu, Jun 13, 2019 at 12:32:51PM -0400, VG wrote: >> > I have a scripting question regarding submitting jobs to the cluster. >> > There is a limitation per user of 1000 jobs only. >> > Let's say I have 1200 tar.gz files >> > >> > >> > I tried to submit all the jobs together but after 1000 jobs it gave me >> an >> > error message saying per user limit is 1000 and after that it did not >> > queued the remaining jobs. >> > I want to write a script where if the submitted jobs goes below >> > 1000(because they finished running), then next jobs are submitted in the >> > queue. How can I do that? >> > I have written something like this: >> > >> > for i in *tar.gz >> > do >> > qsub -l h_vmem=4G -cwd -j y -b y -N tar -R y -q all.q,gpu.q "tar >> -xzf $i" >> > done >> > >> > Hope to hear from you soon. >> > >> > Regards >> > Varun >> >> > _______________________________________________ >> > users mailing list >> > users@gridengine.org >> > https://gridengine.org/mailman/listinfo/users >> >> >> -- >> -- Skylar Thompson (skyl...@u.washington.edu) >> -- Genome Sciences Department, System Administrator >> -- Foege Building S046, (206)-685-7354 >> -- University of Washington School of Medicine >> _______________________________________________ >> users mailing list >> users@gridengine.org >> https://gridengine.org/mailman/listinfo/users >> > _______________________________________________ > users mailing list > users@gridengine.org > https://gridengine.org/mailman/listinfo/users >
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