There is a missprint there: Instead of
dmb1.addAltEntry("bio2",mouse); should be dmb1.addAltEntry("bio2",human);
Thanks!
On 19 February 2013 12:08, Emanuel Santos <[email protected]> wrote:
> Hi, thanks for the reply.
>
> Try using hasSubclass(Resourse, true) and hasSubclass(Resourse, false) and
> didnt get the right results.
>
> Here is the example:
>
> I'm using the mouse and human ontologies used in OAEI.
>
>
> (...) files....bio1... bio2
>
> OntModel model1 = ModelFactory.createOntologyModel(OntModelSpec.
> OWL_MEM_TRANS_INF);
>
> OntDocumentManager dmb1 = model1.getDocumentManager();
>
> dmb1.addAltEntry("bio1",mouse);
>
> dmb1.addAltEntry("bio2",mouse);
>
> System.out.println("Loading Ontology (1) ...");
>
> model1.read("bio1");
>
> model1.read("bio2");
>
>
> OntClass cl1 = model1.getOntClass("http://mouse.owl#MA_0001251";);
>
> OntClass cl2 = model1.getOntClass("http://human.owl#NCI_C49482";);
>
> cl1.addSubClass(cl2);
>
> cl1.addSuperClass(cl2);
>
> cl2.addSubClass(cl1);
>
> cl2.addSuperClass(cl1);
>
> OntClass cl3 = model1.getOntClass("http://mouse.owl#MA_0000011";);
>
> OntClass cl4 = model1.getOntClass("http://human.owl#NCI_C12374";);
>
> cl3.addSubClass(cl4);
>
> cl3.addSuperClass(cl4);
>
> cl4.addSubClass(cl3);
>
> cl4.addSuperClass(cl3);
>
> OntClass cl5 = model1.getOntClass("http://mouse.owl#MA_0000003";);
>
> OntClass cl6 = model1.getOntClass("http://human.owl#NCI_C12919";);
>
> cl5.addSubClass(cl6);
>
> cl5.addSuperClass(cl6);
>
> cl6.addSubClass(cl5);
>
> cl6.addSuperClass(cl5);
>
>
> OntClass clss1 = model1.getOntClass("http://mouse.owl#MA_0000011";);
>
>
> OntClass clss2 = model1.getOntClass("http://human.owl#NCI_C12919";);
>
> if(clss2.hasSubClass(clss1)){
>
> System.out.println(clss2.toString() + " has subclasse " +
> clss1.toString() );
>
> }
>
> OntClass clss3 = model1.getOntClass("http://human.owl#NCI_C21599";);
>
> if(clss3.hasSubClass(clss1)){
>
> System.out.println(clss3.toString() + " has subclasse " +
> clss1.toString() );
>
> }
>
> OntClass clss4 = model1.getOntClass("http://mouse.owl#MA_0001755";);
>
> if(clss1.hasSubClass(clss4)){
>
> System.out.println(clss1.toString() + " has subclasse " +
> clss4.toString() );
>
> }
>
> if(clss2.hasSubClass(clss4)){
>
> System.out.println(clss2.toString() + " has subclasse " +
> clss4.toString() );
>
> }
>
>
> if(clss3.hasSubClass(clss4)){
>
> System.out.println(clss3.toString() + " has subclasse " +
> clss4.toString() );
>
> }else{
>
> System.out.println(clss3.toString() + " doesnt have subclasse " +
> clss4.toString() );
>
> }
>
>
>
> Result:
>
> http://human.owl#NCI_C12919 has subclasse http://mouse.owl#MA_0000011
>
> http://human.owl#NCI_C21599 has subclasse http://mouse.owl#MA_0000011
>
> http://mouse.owl#MA_0000011 has subclasse http://mouse.owl#MA_0001755
>
> http://human.owl#NCI_C12919 has subclasse http://mouse.owl#MA_0001755
>
> http://human.owl#NCI_C21599 doesnt have subclasse
> http://mouse.owl#MA_0001755
>
>
>
> Where is the bug ? It could be a easy one.. I didn't sleep.. :)
>
>
> Thanks!
>
>
>
>
>
> On 19 February 2013 09:33, Ian Dickinson <[email protected]> wrote:
>
>> Hi Emanuel,
>> These kinds of questions are *much* easier to answer if you supply a
>> complete minimal example - working code, including the data. The short
>> answer is that the transitive reasoner should give you the answer you're
>> expecting, so there's something wrong in the way you're querying the model,
>> or something wrong in the data.
>>
>> Ian
>>
>>
>> On 19/02/13 04:31, Emanuel Santos wrote:
>>
>>> Hi again,
>>>
>>> I have a ontology model created with "OntModelSpec.OWL_MEM_TRANS_**INF".
>>>
>>> Given the original ontology I added some new "subclass" relations
>>> between some classes (using addSubClass and addSuperClass methods).
>>>
>>> Now I have a class A that is a subclass of B and C.
>>> And another class D that is subclass of A.
>>>
>>> (these results are given by hasSubClass method)
>>>
>>>
>>> Given this model I should get the result that D is a subclass of B and
>>> C. But for some reason I'm not getting that result (again using
>>> hasSubClass method)
>>> Does this mean that the model does not fully update the new inferred
>>> relations between classes ? What should I do?
>>>
>>> It is odd, because A is only a subclass (not direct one) of C after
>>> the addition of the new relations, i.e. A subclass C is inferred.
>>>
>>> Any ideas ?!
>>>
>>> Thanks!
>>>
>>>
>>
>> --
>> ______________________________**______________________________
>> Ian Dickinson Epimorphics Ltd, Bristol, UK
>> mailto:[email protected] http://www.epimorphics.com
>> cell: +44-7786-850536 landline: +44-1275-399069
>> ------------------------------**------------------------------
>> Epimorphics Ltd. is a limited company registered in England
>> (no. 7016688). Registered address: Court Lodge, 105 High St,
>> Portishead, Bristol BS20 6PT, UK
>>
>>
>
