Found this too, then nothing else for last month in journalctl
Apr 12 12:30:55 solid java[22910]: [2021-04-12 12:30:55] Fuseki WARN
[346] RC = 500 : a fault occurred in a recent unsafe memory access
operation in compiled Java code
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.dboe.base.buffer.RecordBuffer.compare(RecordBuffer.java:192)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.dboe.base.buffer.RecordBuffer.find(RecordBuffer.java:167)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.dboe.base.buffer.RecordBuffer.find(RecordBuffer.java:124)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.dboe.trans.bplustree.BPTreeRecords.internalInsert(BPTreeRecords.java:158)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.dboe.trans.bplustree.BPTreeNode.internalInsert(BPTreeNode.java:522)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.dboe.trans.bplustree.BPTreeNode.internalInsert(BPTreeNode.java:522)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.dboe.trans.bplustree.BPTreeNode.insert(BPTreeNode.java:203)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.dboe.trans.bplustree.BPlusTree.insertAndReturnOld(BPlusTree.java:278)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.dboe.trans.bplustree.BPlusTree.insert(BPlusTree.java:271)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.tdb2.store.tupletable.TupleIndexRecord.performAdd(TupleIndexRecord.java:94)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.tdb2.store.tupletable.TupleIndexBase.add(TupleIndexBase.java:66)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.tdb2.store.tupletable.TupleTable.add(TupleTable.java:95)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.tdb2.store.nodetupletable.NodeTupleTableConcrete.addRow(NodeTupleTableConcrete.java:79)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.tdb2.store.QuadTable.add(QuadTable.java:57)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.tdb2.store.StorageTDB.add(StorageTDB.java:117)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.dboe.storage.system.DatasetGraphStorage.add(DatasetGraphStorage.java:165)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.sparql.core.DatasetGraphWrapper.add(DatasetGraphWrapper.java:176)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.sparql.core.DatasetGraphWrapper.add(DatasetGraphWrapper.java:176)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.sparql.core.DatasetGraphMonitor.add$(DatasetGraphMonitor.java:115)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.sparql.core.DatasetGraphMonitor.add(DatasetGraphMonitor.java:110)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.sparql.core.GraphView.performAdd(GraphView.java:152)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.graph.impl.GraphBase.add(GraphBase.java:184)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.riot.system.StreamRDFLib$ParserOutputGraph.triple(StreamRDFLib.java:181)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.riot.system.StreamRDFWrapper.triple(StreamRDFWrapper.java:40)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.riot.system.StreamRDFCountingBase.triple(StreamRDFCountingBase.java:39)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.riot.system.StreamRDFWrapper.triple(StreamRDFWrapper.java:40)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.riot.system.StreamRDFCountingBase.triple(StreamRDFCountingBase.java:39)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.riot.lang.LangTurtle.emit(LangTurtle.java:57)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.riot.lang.LangTurtleBase.emitTriple(LangTurtleBase.java:561)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.riot.lang.LangTurtleBase.objectList(LangTurtleBase.java:424)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.riot.lang.LangTurtleBase.predicateObjectItem(LangTurtleBase.java:356)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.riot.lang.LangTurtleBase.predicateObjectList(LangTurtleBase.java:349)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.riot.lang.LangTurtleBase.triples(LangTurtleBase.java:318)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.riot.lang.LangTurtleBase.triplesSameSubject(LangTurtleBase.java:178)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.riot.lang.LangTurtle.oneTopLevelElement(LangTurtle.java:46)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.riot.lang.LangTurtleBase.runParser(LangTurtleBase.java:79)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.riot.lang.LangBase.parse(LangBase.java:41)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.riot.RDFParserRegistry$ReaderRIOTLang.read(RDFParserRegistry.java:184)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.riot.RDFParser.read(RDFParser.java:353)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.riot.RDFParser.parseNotUri(RDFParser.java:343)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.riot.RDFParser.parse(RDFParser.java:292)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.riot.RDFParserBuilder.parse(RDFParserBuilder.java:540)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.fuseki.servlets.ActionLib.parse(ActionLib.java:235)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.fuseki.system.Upload.fileUploadWorker(Upload.java:156)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.fuseki.system.Upload.incomingData(Upload.java:66)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.fuseki.servlets.GSP_RW.addDataIntoTxn(GSP_RW.java:161)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.fuseki.servlets.GSP_RW.doPutPostGSP(GSP_RW.java:129)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.fuseki.servlets.GSP_RW.execPostGSP(GSP_RW.java:78)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.fuseki.servlets.GSP_RW.doPost(GSP_RW.java:75)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.fuseki.servlets.ActionREST.doPost$(ActionREST.java:102)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.fuseki.servlets.ActionREST.execute(ActionREST.java:51)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.fuseki.servlets.ActionService.executeLifecycle(ActionService.java:58)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.fuseki.servlets.ActionREST.execAny(ActionREST.java:165)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.fuseki.servlets.ActionProcessor.execPost(ActionProcessor.java:48)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.fuseki.servlets.ActionProcessor.process(ActionProcessor.java:34)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.fuseki.servlets.ActionBase.process(ActionBase.java:55)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.fuseki.servlets.ActionExecLib.execAction(ActionExecLib.java:106)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.fuseki.server.Dispatcher.dispatchAction(Dispatcher.java:118)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.fuseki.server.Dispatcher.process(Dispatcher.java:110)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.fuseki.server.Dispatcher.dispatch(Dispatcher.java:96)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.fuseki.servlets.FusekiFilter.doFilter(FusekiFilter.java:51)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.servlet.FilterHolder.doFilter(FilterHolder.java:193)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.servlet.ServletHandler$Chain.doFilter(ServletHandler.java:1601)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:61)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.shiro.web.servlet.AdviceFilter.executeChain(AdviceFilter.java:108)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.shiro.web.servlet.AdviceFilter.doFilterInternal(AdviceFilter.java:137)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:66)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.shiro.web.servlet.AdviceFilter.executeChain(AdviceFilter.java:108)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.shiro.web.servlet.AdviceFilter.doFilterInternal(AdviceFilter.java:137)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:66)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.shiro.web.servlet.AbstractShiroFilter.executeChain(AbstractShiroFilter.java:450)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.shiro.web.servlet.AbstractShiroFilter$1.call(AbstractShiroFilter.java:365)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.shiro.subject.support.SubjectCallable.doCall(SubjectCallable.java:90)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.shiro.subject.support.SubjectCallable.call(SubjectCallable.java:83)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.shiro.subject.support.DelegatingSubject.execute(DelegatingSubject.java:387)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.shiro.web.servlet.AbstractShiroFilter.doFilterInternal(AbstractShiroFilter.java:362)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.servlet.FilterHolder.doFilter(FilterHolder.java:193)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.servlet.ServletHandler$Chain.doFilter(ServletHandler.java:1601)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.fuseki.servlets.CrossOriginFilter.handle(CrossOriginFilter.java:284)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.apache.jena.fuseki.servlets.CrossOriginFilter.doFilter(CrossOriginFilter.java:247)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.servlet.FilterHolder.doFilter(FilterHolder.java:201)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.servlet.ServletHandler$Chain.doFilter(ServletHandler.java:1601)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:548)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:602)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:235)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1612)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:233)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1434)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:188)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:501)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1582)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:186)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1349)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.server.handler.gzip.GzipHandler.handle(GzipHandler.java:716)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.server.Server.handle(Server.java:516)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.server.HttpChannel.lambda$handle$1(HttpChannel.java:383)
~[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.server.HttpChannel.dispatch(HttpChannel.java:556)
[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:375)
[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:273)
[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:311)
[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:105)
[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.io.ChannelEndPoint$1.run(ChannelEndPoint.java:104)
[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:773)
[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: at
org.eclipse.jetty.util.thread.QueuedThreadPool$Runner.run(QueuedThreadPool.java:905)
[fuseki-server.jar:3.17.0]
Apr 12 12:30:55 solid java[22910]: [2021-04-12 12:30:55] Fuseki INFO
[346] 500 Server Error (26.663 s)
On 26/04/2021 13.24, Mikael Pesonen wrote:
There are few of these too (I'm grepping journalctl with 'fuseki'):
Mar 22 16:04:22 solid java[1398]: [2021-03-22 16:04:22] WebAppContext
WARN Failed startup of context o.e.j.w.WebAppContext@15dd5ac2{Apache
Jena Fuseki Server,/,file:///opt/insight/jena/webapp/,UNAVAILABLE}
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.assembler.assemblers.AssemblerGroup$PlainAssemblerGroup.openBySpecificType(AssemblerGroup.java:165)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.assembler.assemblers.AssemblerGroup$PlainAssemblerGroup.open(AssemblerGroup.java:144)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.assembler.assemblers.AssemblerGroup$ExpandingAssemblerGroup.open(AssemblerGroup.java:93)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.assembler.assemblers.AssemblerBase.open(AssemblerBase.java:39)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.assembler.assemblers.AssemblerBase.open(AssemblerBase.java:35)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.fuseki.build.FusekiConfig.getDataset(FusekiConfig.java:687)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.fuseki.build.FusekiConfig.buildDataService(FusekiConfig.java:444)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.fuseki.build.FusekiConfig.buildDataAccessPoint(FusekiConfig.java:434)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.fuseki.webapp.FusekiWebapp.configFromTemplate(FusekiWebapp.java:323)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.fuseki.webapp.FusekiWebapp.initServerConfiguration(FusekiWebapp.java:252)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.fuseki.webapp.FusekiWebapp.initializeDataAccessPoints(FusekiWebapp.java:219)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.fuseki.webapp.FusekiServerListener.serverInitialization(FusekiServerListener.java:97)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.fuseki.webapp.FusekiServerListener.contextInitialized(FusekiServerListener.java:57)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.eclipse.jetty.server.handler.ContextHandler.callContextInitialized(ContextHandler.java:1068)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.eclipse.jetty.servlet.ServletContextHandler.callContextInitialized(ServletContextHandler.java:572)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.eclipse.jetty.server.handler.ContextHandler.contextInitialized(ContextHandler.java:997)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:746)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:379)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.eclipse.jetty.webapp.WebAppContext.startWebapp(WebAppContext.java:1457)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1422)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:911)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.eclipse.jetty.servlet.ServletContextHandler.doStart(ServletContextHandler.java:288)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:524)
[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:73)
[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.eclipse.jetty.util.component.ContainerLifeCycle.start(ContainerLifeCycle.java:169)
[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.eclipse.jetty.util.component.ContainerLifeCycle.doStart(ContainerLifeCycle.java:110)
[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.eclipse.jetty.server.handler.AbstractHandler.doStart(AbstractHandler.java:97)
[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.eclipse.jetty.server.handler.gzip.GzipHandler.doStart(GzipHandler.java:426)
[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:73)
[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.eclipse.jetty.util.component.ContainerLifeCycle.start(ContainerLifeCycle.java:169)
[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.eclipse.jetty.server.Server.start(Server.java:423)
[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.eclipse.jetty.util.component.ContainerLifeCycle.doStart(ContainerLifeCycle.java:110)
[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.eclipse.jetty.server.handler.AbstractHandler.doStart(AbstractHandler.java:97)
[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.eclipse.jetty.server.Server.doStart(Server.java:387)
[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:73)
[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.fuseki.cmd.JettyFusekiWebapp.start(JettyFusekiWebapp.java:125)
[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.fuseki.cmd.FusekiCmd.runFuseki(FusekiCmd.java:376)
[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.fuseki.cmd.FusekiCmd$FusekiCmdInner.exec(FusekiCmd.java:360)
[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
jena.cmd.CmdMain.mainMethod(CmdMain.java:92) [fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
jena.cmd.CmdMain.mainRun(CmdMain.java:58) [fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
jena.cmd.CmdMain.mainRun(CmdMain.java:45) [fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.fuseki.cmd.FusekiCmd$FusekiCmdInner.innerMain(FusekiCmd.java:105)
[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.fuseki.cmd.FusekiCmd.main(FusekiCmd.java:68)
[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.tdb.base.file.LocationLock.checkLockFileForRead(LocationLock.java:276)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.tdb.base.file.LocationLock.getOwner(LocationLock.java:104)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.tdb.base.file.LocationLock.canObtain(LocationLock.java:139)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.tdb.StoreConnection._makeAndCache(StoreConnection.java:280)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.tdb.StoreConnection.make(StoreConnection.java:244)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.tdb.StoreConnection.make(StoreConnection.java:258)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.tdb.transaction.DatasetGraphTransaction.<init>(DatasetGraphTransaction.java:69)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.tdb.sys.TDBMaker.createDirect(TDBMaker.java:126)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.tdb.sys.TDBMaker._create(TDBMaker.java:112)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.tdb.sys.TDBMaker.createDatasetGraphTransaction(TDBMaker.java:43)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.tdb.TDBFactory._createDatasetGraph(TDBFactory.java:93)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.tdb.TDBFactory.createDatasetGraph(TDBFactory.java:71)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.tdb.assembler.DatasetAssemblerTDB.make(DatasetAssemblerTDB.java:57)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.tdb.assembler.DatasetAssemblerTDB.createDataset(DatasetAssemblerTDB.java:48)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.sparql.core.assembler.DatasetAssembler.open(DatasetAssembler.java:43)
~[fuseki-server.jar:3.17.0]
Mar 22 16:04:22 solid java[1398]: at
org.apache.jena.assembler.assemblers.AssemblerGroup$PlainAssemblerGroup.openBySpecificType(AssemblerGroup.java:157)
~[fuseki-server.jar:3.17.0]
On 26/04/2021 13.00, Andy Seaborne wrote:
On 26/04/2021 10:19, Mikael Pesonen wrote:
Is this correct one:
Well, it's not the one you showed in the initial message which was
Apr 23 13:51:09 solid java[6846]: [2021-04-23 13:51:09] Fuseki WARN
[2] RC = 500 : NodeTableTRDF/Read
but the important question is:
Do you have the logs from when the update/disk full incident happened?
That seems like it is when the problem started. The rest are
consequences.
Andy
Apr 23 14:34:58 solid java[1153]: [2021-04-23 14:34:58] Fuseki INFO
[1] 500 Server Error (1.976 s)
Apr 23 15:30:27 solid systemd[1]: Configuration file
/lib/systemd/system/apache-jena-fuseki.service is marked
world-inaccessible. This has no effect as configuration data is
accessible via APIs without restrictions. Proceeding anyway.
Apr 23 15:30:27 solid systemd[1]: Configuration file
/lib/systemd/system/apache-jena-fuseki.path is marked
world-inaccessible. This has no effect as configuration data is
accessible via APIs without restrictions. Proceeding anyway.
Apr 23 15:30:34 solid systemd[1]: Configuration file
/lib/systemd/system/apache-jena-fuseki.service is marked
world-inaccessible. This has no effect as configuration data is
accessible via APIs without restrictions. Proceeding anyway.
Apr 23 15:30:54 solid sudo[21457]: **: TTY=pts/0 ; PWD=/home/**;
USER=root ; COMMAND=/bin/cat
/lib/systemd/system/apache-jena-fuseki.service
Apr 23 15:31:44 solid sudo[22157]: **: TTY=pts/1 ; PWD=/home/**;
USER=root ; COMMAND=/bin/cat
/lib/systemd/system/apache-jena-fuseki.service
After that comes NodeTableTRDF/Read exception.
On 23/04/2021 21.11, Andy Seaborne wrote:
On 23/04/2021 14:57, Mikael Pesonen wrote:
Sorry here is the entire log
It's a different log. [2] is now [5]
Apr 23 16:23:49 solid java[1153]: [2021-04-23 16:23:49] Fuseki
INFO [5] POST http://nimisampo.lingsoft.fi:3030/ds
Apr 23 16:23:49 solid java[1153]: [2021-04-23 16:23:49] Fuseki
INFO [6] POST http://nimisampo.lingsoft.fi:3030/ds
Apr 23 16:23:49 solid java[1153]: [2021-04-23 16:23:49] Fuseki
INFO [5]
Apr 23 16:23:49 solid java[1153]: [2021-04-23 16:23:49] Fuseki
INFO [6] 200 OK (155 ms)
Apr 23 16:23:49 solid java[1153]: [2021-04-23 16:23:49] Fuseki
WARN [5] RC = 500 : NodeTableTRDF/Read
Apr 23 16:23:49 solid java[1153]: at
org.apache.jena.tdb2.store.nodetable.NodeTableTRDF.readNodeFromTable(NodeTableTRDF.java:87)
~[fuseki-server.jar:3.17.0]
...
~[fuseki-server.jar:3.17.0]
Apr 23 16:23:49 solid java[1153]: at
org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:135)
~[fuseki-server.jar:3.17.0]
Apr 23 16:23:49 solid java[1153]: at
org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:773)
[fuseki-server.jar:3.17.0]
Apr 23 16:23:49 solid java[1153]: at
org.eclipse.jetty.util.thread.QueuedThreadPool$Runner.run(QueuedThreadPool.java:905)
[fuseki-server.jar:3.17.0]
This seems to be two stacktraces or printing the "caused by" seems
to be wrong
TProtocolUtil:144 is an exception throw.
Regardless, the node table is broken.
Do you have the logs from when the update/disk full incident happened?
Andy
Apr 23 16:23:49 solid java[1153]: at
org.apache.thrift.protocol.TProtocolUtil.skip(TProtocolUtil.java:144)
~[fuseki-server.jar:3.17.0]
Apr 23 16:23:49 solid java[1153]: at
org.apache.thrift.protocol.TProtocolUtil.skip(TProtocolUtil.java:60)
~[fuseki-server.jar:3.17.0]
Apr 23 16:23:49 solid java[1153]: at
org.apache.jena.riot.thrift.wire.RDF_Term.standardSchemeReadValue(RDF_Term.java:433)
~[fuseki-server.jar:3.17.0]
Apr 23 16:23:49 solid java[1153]: at
org.apache.thrift.TUnion$TUnionStandardScheme.read(TUnion.java:224)
~[fuseki-server.jar:3.17.0]
Apr 23 16:23:49 solid java[1153]: at
org.apache.thrift.TUnion$TUnionStandardScheme.read(TUnion.java:213)
~[fuseki-server.jar:3.17.0]
Apr 23 16:23:49 solid java[1153]: at
org.apache.thrift.TUnion.read(TUnion.java:138)
~[fuseki-server.jar:3.17.0]
Apr 23 16:23:49 solid java[1153]: at
org.apache.jena.tdb2.store.nodetable.NodeTableTRDF.readNodeFromTable(NodeTableTRDF.java:82)
~[fuseki-server.jar:3.17.0]
Apr 23 16:23:49 solid java[1153]: [2021-04-23 16:23:49] Fuseki
INFO [5] 500 Server Error (568 ms)
On 23/04/2021 16.40, Andy Seaborne wrote:
On 23/04/2021 13:33, Mikael Pesonen wrote:
Hi,
we get this exception now when starting Jena and it's not
loading any data. I have no idea what is changed on the server.
Apr 23 13:51:09 solid java[6846]: [2021-04-23 13:51:09] Fuseki
WARN [2] RC = 500 : NodeTableTRDF/Read
Apr 23 13:51:09 solid java[6846]:
org.apache.jena.tdb2.TDBException: NodeTableTRDF/Read
Apr 23 13:51:09 solid java[6846]: at
org.apache.jena.tdb2.store.nodetable.NodeTableTRDF.readNodeFromTable(NodeTableTRDF.java:87)
~[fuseki-server.jar:3.17.0]
Apr 23 13:51:09 solid java[6846]: at
org.apache.jena.tdb2.store.nodetable.NodeTableNative._retrieveNodeByNodeId(NodeTableNative.java:103)
~[fuseki-server.jar:3.17.0]
TDBException wraps a Thrift exception which has the details.
Any idea what is going on? There was shortage of disk space,
hope the db is not corrupted.
You would have got errors at update time.
Andy
Service:
ExecStart=/usr/lib/jvm/java-8-oracle/bin/java -Xmx3000M -jar
/opt/insight/jena/fuseki-server.jar --update --port 3030
--config=/opt/insight/jena/run/fuseki_config.ttl
Config:
PREFIX : <#>
PREFIX fuseki: <http://jena.apache.org/fuseki#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX ja: <http://jena.hpl.hp.com/2005/11/Assembler#>
PREFIX tdb2: <http://jena.apache.org/2016/tdb#>
PREFIX text: <http://jena.apache.org/text#>
PREFIX lsrm: <https://resource.lingsoft.fi/ns/resource_meta#>
[] rdf:type fuseki:Server ;
fuseki:services (
:service
) .
:service rdf:type fuseki:Service ;
fuseki:name "/ds" ; # http://host:port/ds-ro
fuseki:serviceQuery "query" ; # SPARQL query service
fuseki:serviceQuery "sparql" ; # SPARQL query service
fuseki:serviceUpdate "update" ; # SPARQL update service
fuseki:serviceUpload "upload" ; # Non-SPARQL upload service
fuseki:serviceReadWriteGraphStore "data" ; # SPARQL Graph store
protocol (read and write)
fuseki:dataset :text_dataset ;
.
:text_dataset rdf:type text:TextDataset ;
text:dataset :tdb2_dataset ;
text:index :indexLucene ;
.
:tdb2_dataset rdf:type tdb2:DatasetTDB2 ;
tdb2:location "/opt/insight/jena_data/" ;
.
# Text index description
:indexLucene a text:TextIndexLucene ;
text:directory <file:/opt/insight/jena_text_index/> ;
text:entityMap :entMap ;
text:storeValues true ;
#text:analyzer [ a text:StandardAnalyzer ] ;
#text:queryAnalyzer [ a text:KeywordAnalyzer ] ;
#text:queryParser text:QueryParser ; # text:AnalyzingQueryParser
#text:multilingualSupport true ;
.
:entMap a text:EntityMap ;
text:entityField "uri" ;
## Must be defined in the text:map
text:defaultField "lsrm_lmz_title" ;
## Enable deleting of text index entries.
text:uidField "uid" ;
text:langField "lang" ;
text:graphField "graph" ;
text:map (
[ text:field "lsrm_lmz_title" ; text:predicate lsrm:lmz_title]
[ text:field "lsrm_lmz_content" ; text:predicate lsrm:lmz_content]
)
.
--
Lingsoft - 30 years of Leading Language Management
www.lingsoft.fi
Speech Applications - Language Management - Translation - Reader's and Writer's
Tools - Text Tools - E-books and M-books
Mikael Pesonen
System Engineer
e-mail: mikael.peso...@lingsoft.fi
Tel. +358 2 279 3300
Time zone: GMT+2
Helsinki Office
Eteläranta 10
FI-00130 Helsinki
FINLAND
Turku Office
Kauppiaskatu 5 A
FI-20100 Turku
FINLAND
