Dear community, 

Jena and Jena-fuseki 4.9/4.10/5.1 do not display the results (namespace/prefix 
vs uri) similarly in my hands and I wonder what I did wrong. 
I use the applications via downloading from jena website or through the 
stain/jena docker images. 
I load the same data set in both context(tdb2.tdbloader --loc DB $files or 
upload manually in fuseki GUI). 
I send the same query to both either through ./bin/tdb2.tdbquery --loc DB 
--file request.sq or through fuseki GUI. 
The replies are different as fuseki will replace all prefixes by URIs and jena 
will replace some only and I did not see why some and not others. See below. 

Can someone explain this behaviour to me? 

Best regards, 
Christophe 

PREFIX DOID: <https://disease-ontology.org/> 
PREFIX ECO: <http://purl.obolibrary.org/obo/ECO_> 
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> 
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> 
PREFIX WBGene: <https://wormbase.org/species/c_elegans/gene/WBGene> 
PREFIX WBdb: <https://wormbase.org/> 
PREFIX wbls: <https://wormbase.org/search/life_stage/> 
PREFIX cedre: <https://igdr.univ-rennes.fr/en/bio-data-graphs#> 

SELECT DISTINCT ?o ?p ?s 
WHERE { 
?o ?p ?s 
} 
LIMIT 10 

Jena-Fueski response: 
1 
        
< [ https://wormbase.org/anat_00033302 | https://wormbase.org/anat_00033302 ] > 
        
< [ https://igdr.univ-rennes.fr/en/bio-data-graphs#refersToGene | 
https://igdr.univ-rennes.fr/en/bio-data-graphs#refersToGene ] > 
        
< [ https://wormbase.org/species/c_elegans/gene/WBGene00001186 | 
https://wormbase.org/species/c_elegans/gene/WBGene00001186 ] > 

2 
        
< [ https://wormbase.org/anat_00033302 | https://wormbase.org/anat_00033302 ] > 
        
< [ https://igdr.univ-rennes.fr/en/bio-data-graphs#refersToAnatomicalStructure 
| https://igdr.univ-rennes.fr/en/bio-data-graphs#refersToAnatomicalStructure ] 
> 
        
< [ https://wormbase.org/species/all/anatomy_term/WBbt:0006236 | 
https://wormbase.org/species/all/anatomy_term/WBbt:0006236 ] > 

3 
        
< [ https://wormbase.org/anat_00033302 | https://wormbase.org/anat_00033302 ] > 
        
< [ https://igdr.univ-rennes.fr/en/bio-data-graphs#hasEvidence | 
https://igdr.univ-rennes.fr/en/bio-data-graphs#hasEvidence ] > 
        
< [ http://purl.obolibrary.org/obo/ECO_0000314 | 
http://purl.obolibrary.org/obo/ECO_0000314 ] > 

4 
        
< [ https://wormbase.org/anat_00033302 | https://wormbase.org/anat_00033302 ] > 
        
< [ https://igdr.univ-rennes.fr/en/bio-data-graphs#hasReference | 
https://igdr.univ-rennes.fr/en/bio-data-graphs#hasReference ] > 
        
< [ https://wormbase.org/resources/paper/WBPaper00004833 | 
https://wormbase.org/resources/paper/WBPaper00004833 ] > 

5 
        
< [ https://wormbase.org/anat_00262962 | https://wormbase.org/anat_00262962 ] > 
        
< [ https://igdr.univ-rennes.fr/en/bio-data-graphs#refersToGene | 
https://igdr.univ-rennes.fr/en/bio-data-graphs#refersToGene ] > 
        
< [ https://wormbase.org/species/c_elegans/gene/WBGene00016462 | 
https://wormbase.org/species/c_elegans/gene/WBGene00016462 ] > 

6 
        
< [ https://wormbase.org/anat_00262962 | https://wormbase.org/anat_00262962 ] > 
        
< [ https://igdr.univ-rennes.fr/en/bio-data-graphs#refersToAnatomicalStructure 
| https://igdr.univ-rennes.fr/en/bio-data-graphs#refersToAnatomicalStructure ] 
> 
        
< [ https://wormbase.org/species/all/anatomy_term/WBbt:0005991 | 
https://wormbase.org/species/all/anatomy_term/WBbt:0005991 ] > 

7 
        
< [ https://wormbase.org/anat_00262962 | https://wormbase.org/anat_00262962 ] > 
        
< [ https://igdr.univ-rennes.fr/en/bio-data-graphs#hasEvidence | 
https://igdr.univ-rennes.fr/en/bio-data-graphs#hasEvidence ] > 
        
< [ http://purl.obolibrary.org/obo/ECO_0000314 | 
http://purl.obolibrary.org/obo/ECO_0000314 ] > 

8 
        
< [ https://wormbase.org/anat_00262962 | https://wormbase.org/anat_00262962 ] > 
        
< [ https://igdr.univ-rennes.fr/en/bio-data-graphs#hasReference | 
https://igdr.univ-rennes.fr/en/bio-data-graphs#hasReference ] > 
        
< [ https://wormbase.org/resources/paper/WBPaper00061340 | 
https://wormbase.org/resources/paper/WBPaper00061340 ] > 

9 
        
< [ https://wormbase.org/anat_00301278 | https://wormbase.org/anat_00301278 ] > 
        
< [ https://igdr.univ-rennes.fr/en/bio-data-graphs#refersToGene | 
https://igdr.univ-rennes.fr/en/bio-data-graphs#refersToGene ] > 
        
< [ https://wormbase.org/species/c_elegans/gene/WBGene00019318 | 
https://wormbase.org/species/c_elegans/gene/WBGene00019318 ] > 

10 
        
< [ https://wormbase.org/anat_00301278 | https://wormbase.org/anat_00301278 ] > 
        
< [ https://igdr.univ-rennes.fr/en/bio-data-graphs#refersToAnatomicalStructure 
| https://igdr.univ-rennes.fr/en/bio-data-graphs#refersToAnatomicalStructure ] 
> 
        
< [ https://wormbase.org/species/all/anatomy_term/WBbt:0006151 | 
https://wormbase.org/species/all/anatomy_term/WBbt:0006151 ] > 

Jena response: 

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