Managed to get it going (found another log file I didn't know
existed!!). Websites are back up now but it looks like I have much work
to do judging by logged errors -
2018-12-11T00:23:09.838450Z 0 [System] [MY-010116] [Server]
/usr/libexec/mysqld (mysqld 8.0.13) starting as process 5200
2018-12-11T00:23:11.373458Z 0 [Warning] [MY-010068] [Server] CA
certificate ca.pem is self signed.
2018-12-11T00:23:11.384224Z 0 [ERROR] [MY-013129] [Server] A message
intended for a client cannot be sent there as no client-session is
attached. Therefore, we're sending the information to the error-log
instead: MY-001146 - Table 'mysql.component' doesn't exist
2018-12-11T00:23:11.384307Z 0 [Warning] [MY-013129] [Server] A message
intended for a client cannot be sent there as no client-session is
attached. Therefore, we're sending the information to the error-log
instead: MY-003543 - The mysql.component table is missing or has an
incorrect definition.
2018-12-11T00:23:11.455427Z 0 [Warning] [MY-010929] [Server] Storage
engine 'MyISAM' does not support system tables. [mysql.user].
2018-12-11T00:23:11.455478Z 0 [Warning] [MY-010929] [Server] Storage
engine 'MyISAM' does not support system tables. [mysql.db].
2018-12-11T00:23:11.455487Z 0 [Warning] [MY-010929] [Server] Storage
engine 'MyISAM' does not support system tables. [mysql.tables_priv].
2018-12-11T00:23:11.455495Z 0 [Warning] [MY-010929] [Server] Storage
engine 'MyISAM' does not support system tables. [mysql.columns_priv].
2018-12-11T00:23:11.455503Z 0 [Warning] [MY-010929] [Server] Storage
engine 'MyISAM' does not support system tables. [mysql.procs_priv].
2018-12-11T00:23:11.455511Z 0 [Warning] [MY-010929] [Server] Storage
engine 'MyISAM' does not support system tables. [mysql.proxies_priv].
2018-12-11T00:23:11.456005Z 0 [ERROR] [MY-013143] [Server] Column count
of mysql.user is wrong. Expected 50, found 45. The table is probably
corrupted
2018-12-11T00:23:11.456042Z 0 [Warning] [MY-010966] [Server] ACL table
mysql.role_edges missing. Some operations may fail.
2018-12-11T00:23:11.456050Z 0 [Warning] [MY-010966] [Server] ACL table
mysql.default_roles missing. Some operations may fail.
2018-12-11T00:23:11.456058Z 0 [Warning] [MY-010966] [Server] ACL table
mysql.global_grants missing. Some operations may fail.
2018-12-11T00:23:11.456065Z 0 [Warning] [MY-010966] [Server] ACL table
mysql.password_history missing. Some operations may fail.
2018-12-11T00:23:11.458828Z 0 [Warning] [MY-010315] [Server] 'user'
entry 'root@localhost' ignored in --skip-name-resolve mode.
2018-12-11T00:23:11.458886Z 0 [Warning] [MY-010315] [Server] 'user'
entry 'mysql.session@localhost' ignored in --skip-name-resolve mode.
2018-12-11T00:23:11.458903Z 0 [Warning] [MY-010315] [Server] 'user'
entry 'mysql.sys@localhost' ignored in --skip-name-resolve mode.
2018-12-11T00:23:11.458920Z 0 [Warning] [MY-010315] [Server] 'user'
entry 'rtadmin@localhost' ignored in --skip-name-resolve mode.
2018-12-11T00:23:11.458936Z 0 [Warning] [MY-010315] [Server] 'user'
entry 'multi_admin@localhost' ignored in --skip-name-resolve mode.
2018-12-11T00:23:11.459128Z 0 [Warning] [MY-010323] [Server] 'db' entry
'performance_schema mysql.session@localhost' ignored in
--skip-name-resolve mode.
2018-12-11T00:23:11.459145Z 0 [Warning] [MY-010323] [Server] 'db' entry
'sys mysql.sys@localhost' ignored in --skip-name-resolve mode.
2018-12-11T00:23:11.459155Z 0 [Warning] [MY-010323] [Server] 'db' entry
'rt rtadmin@localhost' ignored in --skip-name-resolve mode.
2018-12-11T00:23:11.459165Z 0 [Warning] [MY-010323] [Server] 'db' entry
'trisect\_multi multi_admin@localhost' ignored in --skip-name-resolve mode.
2018-12-11T00:23:11.459306Z 0 [Warning] [MY-010311] [Server]
'proxies_priv' entry '@ root@localhost' ignored in --skip-name-resolve mode.
2018-12-11T00:23:11.459325Z 0 [ERROR] [MY-010965] [Server] Missing
system table mysql.global_grants; please run mysql_upgrade to create it.
2018-12-11T00:23:11.463177Z 0 [Warning] [MY-010330] [Server]
'tables_priv' entry 'user mysql.session@localhost' ignored in
--skip-name-resolve mode.
2018-12-11T00:23:11.463210Z 0 [Warning] [MY-010330] [Server]
'tables_priv' entry 'sys_config mysql.sys@localhost' ignored in
--skip-name-resolve mode.
2018-12-11T00:23:11.465057Z 0 [Warning] [MY-010727] [Server] System
table 'func' is expected to be transactional.
2018-12-11T00:23:11.467349Z 0 [Warning] [MY-010405] [Repl] Info table is
not ready to be used. Table 'mysql.slave_master_info' cannot be opened.
2018-12-11T00:23:11.467390Z 0 [ERROR] [MY-010422] [Repl] Error in
checking mysql.slave_master_info repository info type of TABLE.
2018-12-11T00:23:11.467404Z 0 [ERROR] [MY-010415] [Repl] Error creating
master info: Error checking repositories.
2018-12-11T00:23:11.467413Z 0 [ERROR] [MY-010426] [Repl] Slave: Failed
to initialize the master info structure for channel ''; its record may
still be present in 'mysql.slave_master_info' table, consider deleting it.
2018-12-11T00:23:11.467422Z 0 [ERROR] [MY-010529] [Repl] Failed to
create or recover replication info repositories.
2018-12-11T00:23:11.469538Z 0 [System] [MY-010931] [Server]
/usr/libexec/mysqld: ready for connections. Version: '8.0.13' socket:
'/var/lib/mysql/mysql.sock' port: 3306 Source distribution.
2018-12-11T00:23:11.537075Z 0 [System] [MY-011323] [Server] X Plugin
ready for connections. Socket: '/var/lib/mysql/mysqlx.sock'
bind-address: '::' port: 33060
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