Hello,
I used cc to compile. I tried to use mpicc/mpif90 to compile PETSC, but
it changed nothing.
I still have the same error.
I'm giving you the whole compile proccess :
4440p-jobic% gmake solv_ksp
mpicc -o solv_ksp.o -c -fPIC -m64 -I/opt/lib/petsc
-I/opt/lib/petsc/bmake/amd-64-openmpi_no_debug -I/opt/lib/petsc/include
-I/opt/SUNWhpc/HPC8.0/include -I/opt/SUNWhpc/HPC8.0/include/amd64 -I.
-D__SDIR__="" solv_ksp.c
mpicc -fPIC -m64 -o solv_ksp solv_ksp.o
-R/opt/lib/petsc/lib/amd-64-openmpi_no_debug
-L/opt/lib/petsc/lib/amd-64-openmpi_no_debug -lpetscsnes -lpetscksp
-lpetscdm -lpetscmat -lpetscvec -lpetsc -lX11 -lsunperf -lsunmath -lm
-ldl -R/opt/mx/lib/amd64 -R/opt/SUNWhpc/HPC8.0/lib/amd64
-R/opt/SUNWhpc/HPC8.0/lib/amd64 -L/opt/SUNWhpc/HPC8.0/lib/amd64 -lmpi
-lopen-rte -lopen-pal -lnsl -lrt -lm -lsocket -lmpi_f77 -lmpi_f90
-R/opt/SUNWspro/lib/amd64 -R/opt/SUNWspro/lib/amd64
-L/opt/SUNWspro/lib/amd64 -R/opt/SUNWspro/prod/lib/amd64
-L/opt/SUNWspro/prod/lib/amd64 -R/usr/ccs/lib/amd64 -L/usr/ccs/lib/amd64
-R/lib/64 -L/lib/64 -R/usr/lib/64 -L/usr/lib/64 -lm -lfui -lfai -lfsu
-lsunmath -lmtsk -lm -ldl -R/usr/ucblib
ld: warning: symbol `mpi_fortran_status_ignore_' has differing sizes:
(file /opt/SUNWhpc/HPC8.0/lib/amd64/libmpi.so value=0x8; file
/opt/SUNWhpc/HPC8.0/lib/amd64/libmpi_f90.so value=0x14);
/opt/SUNWhpc/HPC8.0/lib/amd64/libmpi.so definition taken
/usr/bin/rm -f solv_ksp.o
Thanks for your help,
Yann
Terry Dontje wrote:
Yann,
How were you trying to link your code with PETSc? Did you use mpif90
or mpif77 wrappers or were you using cc or mpicc wrappers? I ran some
basic tests that test the usage of MPI_STATUS_IGNORE using mpif90 (and
mpif77) and it works fine. However I was able to generate a similar
error as you did when tried to link things with the cc program.
If you are using cc to link could you possibly try to use mpif90 to
link your code?
--td
Date: Tue, 07 Oct 2008 16:55:14 +0200
From: "Yann JOBIC" <jo...@polytech.univ-mrs.fr>
Subject: [OMPI users] OMPI link error with petsc 2.3.3
To: Open MPI Users <us...@open-mpi.org>
Message-ID: <48eb7852.6070...@polytech.univ-mrs.fr>
Content-Type: text/plain; charset=ISO-8859-1; format=flowed
Hello,
I'm using openmpi 1.3r19400 (ClusterTools 8.0), with sun studio 12,
and solaris 10u5
I've got this error when linking a PETSc code :
ld: warning: symbol `mpi_fortran_status_ignore_' has differing sizes:
(file /opt/SUNWhpc/HPC8.0/lib/amd64/libmpi.so value=0x8; file
/opt/SUNWhpc/HPC8.0/lib/amd64/libmpi_f90.so value=0x14);
/opt/SUNWhpc/HPC8.0/lib/amd64/libmpi.so definition taken
Isn't it very strange ?
Have you got any idea on the way to solve it ?
Many thanks,
Yann
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___________________________
Yann JOBIC
HPC engineer
Polytech Marseille DME
IUSTI-CNRS UMR 6595
Technopôle de Château Gombert
5 rue Enrico Fermi
13453 Marseille cedex 13
Tel : (33) 4 91 10 69 39
ou (33) 4 91 10 69 43
Fax : (33) 4 91 10 69 69
