Ralph Castain wrote:
Never seen that one before, though we did put the test in there "just
in case".
Basically, this message indicates that the system returned an error
when we attempted to dup2 the stdout/err file descriptors so we could
setup a pipe by which we can forward that output to you.
I have no idea why the system would refuse the request. You might
check your fd limits to see if they are strangely low, or write a
little test program to see if there is something strange about pipe
permissions.
Most likely thing I can think of, though, is that you possibly are
picking up incompatible libraries, or something got crosswise during
build.
Ralph
Thanks for trying to help me.
I've got in this file : /usr/include/linux/limits.h
#define NR_OPEN 1024
Is it ok ?
Trixy03:~# cat /proc/sys/fs/file-max
781095
Seems fine no ?
How can i write a test code for the pipe permissions? May i've something
wrong in my /dev ? (right permissions ?)
For the library part, i don't know how to check that. On linux, every
libs are in /usr/lib.
Yann
On Feb 11, 2009, at 3:10 AM, Mr Yann JOBIC wrote:
Hello all,
I compiled ompi v1.3 (tarball) with the intel compiler on debian
etch. Everything went fine, thanks for the FAQ (quite complet)
But, when i'm running a job, i've got this error :
Trixy03-jobic% mpirun --verbose --debug-daemons -np 4 ./exe
[Trixy03:15140] [[19525,0],0] orted_cmd: received add_local_procs
[Trixy03:15140] [[19525,0],0] node[0].name Trixy03 daemon 0 arch
ffc91200
--------------------------------------------------------------------------
mpirun was unable to launch the specified application as it
encountered an error:
Error: pipe function call failed when setting up I/O forwarding
subsystem
Node: Trixy03
while attempting to start process rank 0.
--------------------------------------------------------------------------
I don't understand what's going on, and how to debug...
I compiled mpich1, and i can successfully launch a job.
Have you got some ideas of what's going on ?
Many thanks,
Yann
PS : Some possible interesting information :
Open MPI SVN revision: r20295
Open MPI release date: Jan 19, 2009
Open RTE: 1.3
Build CFLAGS: -DNDEBUG -mp1 -m64 -O3 -fno-alias -msse3 -static-intel
-finline-functions -fno-strict-aliasing
-restrict -fexceptions -pthread
-fvisibility=hidden
Build CXXFLAGS: -DNDEBUG -mp1 -m64 -O3 -fno-alias -msse3
-static-intel -finline-functions -fexceptions -pthread
Build FFLAGS: -mp1 -m64 -O3 -fno-alias -msse3 -static-intel -fexceptions
Build FCFLAGS: -mp1 -m64 -O3 -fno-alias -msse3 -static-intel
-fexceptions -fexceptions
Build LDFLAGS: -export-dynamic -fexceptions
Build LIBS: -lnsl -lutil Wrapper extra CFLAGS: -fexceptions -pthread
Wrapper extra CXXFLAGS: -fexceptions -pthread
Wrapper extra FFLAGS: -fexceptions
Wrapper extra FCFLAGS: -fexceptions
Wrapper extra LDFLAGS: Wrapper extra LIBS: -ldl
-Wl,--export-dynamic -lnsl -lutil
--
___________________________
Yann JOBIC
HPC engineer
Polytech Marseille DME
IUSTI-CNRS UMR 6595
Technopôle de Château Gombert
5 rue Enrico Fermi
13453 Marseille cedex 13
Tel : (33) 4 91 10 69 39
ou (33) 4 91 10 69 43
Fax : (33) 4 91 10 69 69
