FYI - there is a Libtool thread/patch that resolved this issue: http://lists.gnu.org/archive/html/libtool/2009-03/msg00035.html
-Ethan On Fri, Mar/20/2009 01:36:58PM, Ethan Mallove wrote: > On Fri, Mar/20/2009 01:09:56PM, Ethan Mallove wrote: > > Let me try this again. Below is the error from OMPI 1.3r20826. In my > > last email, I accidentally posted the compiler error from Sun's > > internal OMPI source repository. > > > > $ cd opal/mca/memory/ptmalloc2 > > $ make > > /bin/sh ../../../../libtool --tag=CC --mode=link pgcc -O -DNDEBUG > > -tp=k8-32 -export-dynamic -o libopenmpi-malloc.la -rpath > > /opt/SUNWhpc/HPC8.2/pgi/lib malloc.lo malloc-stats.lo -lnsl -lutil > > -lpthread > > libtool: link: pgcc -shared -fpic -DPIC .libs/malloc.o > > .libs/malloc-stats.o -lnsl -lutil -lpthread -lc -Wl,-soname > > -Wl,libopenmpi-malloc.so.0 -o .libs/libopenmpi-malloc.so.0.0.0 > > /usr/bin/ld: warning: i386 architecture of input file `.libs/malloc.o' is > > incompatible with i386:x86-64 output > > /usr/bin/ld: warning: i386 architecture of input file > > `.libs/malloc-stats.o' is incompatible with i386:x86-64 output > > .libs/malloc.o(.text+0x14d3): In function `munmap_chunk': > > : undefined reference to `opal_mem_free_ptmalloc2_munmap' > > .libs/malloc.o(.text+0x1550): In function `mremap_chunk': > > : undefined reference to `opal_mem_hooks_release_hook' > > .libs/malloc.o(.text+0x2bd2): In function `_int_free': > > : undefined reference to `opal_mem_free_ptmalloc2_munmap' > > .libs/malloc.o(.text+0x309e): In function `_int_realloc': > > : undefined reference to `opal_mem_hooks_release_hook' > > .libs/malloc.o(.text+0x3c1a): In function `opal_mem_free_ptmalloc2_sbrk': > > : undefined reference to `opal_mem_hooks_release_hook' > > .libs/malloc.o(.text+0x3f9b): In function `ptmalloc_init': > > : undefined reference to `opal_mem_hooks_set_support' > > .libs/malloc.o(.text+0x409d): In function `new_heap': > > : undefined reference to `opal_mem_free_ptmalloc2_munmap' > > .libs/malloc.o(.text+0x40c5): In function `new_heap': > > : undefined reference to `opal_mem_free_ptmalloc2_munmap' > > .libs/malloc.o(.text+0x413f): In function `new_heap': > > : undefined reference to `opal_mem_free_ptmalloc2_munmap' > > .libs/malloc.o(.text+0x4188): In function `new_heap': > > : undefined reference to `opal_mem_free_ptmalloc2_munmap' > > .libs/malloc.o(.text+0x4272): In function `heap_trim': > > : undefined reference to `opal_mem_free_ptmalloc2_munmap' > > .libs/malloc.o(.text+0x449a): In function `arena_get2': > > : undefined reference to `opal_atomic_wmb' > > make: *** [libopenmpi-malloc.la] Error 2 > > I think we have located the problem. Libtool has stripped out > the -tp=k8-32 flag in the link step: > > /bin/sh ../../../../libtool --tag=CC --mode=link pgcc -O -DNDEBUG -tp=k8-32 > -export-dynamic -o libopenmpi-malloc.la -rpath /opt/SUNWhpc/HPC8.2/pgi/lib > malloc.lo malloc-stats.lo -lnsl -lutil -lpthread > libtool: link: pgcc -shared -fpic -DPIC .libs/malloc.o .libs/malloc-stats.o > -lnsl -lutil -lpthread -lc -Wl,-soname -Wl,libopenmpi-malloc.so.0 -o > .libs/libopenmpi-malloc.so.0.0.0 > > If I add it back in manually, all is well: > > $ pgcc -tp=k8-32 -shared -fpic -DPIC .libs/malloc.o .libs/malloc-stats.o > -lnsl -lutil -lpthread -lc -Wl,-soname -Wl,libopenmpi-malloc.so.0 -o > .libs/libopenmpi-malloc.so.0.0.0 > > I am guessing there is some macro (LDFLAGS?) that I can override to > prevent Libtool from stripping out the -tp=k8-32 flag. > > -Ethan > > > > > > -Ethan > > > > > > On Fri, Mar/20/2009 12:49:06PM, Ethan Mallove wrote: > > > Hi, > > > > > > Has anyone successfully compiled Open MPI with the PGI compilers in > > > 32-bit mode (e.g., using -tp=k8-32 flag)? I am getting the following > > > error with 32-bit: > > > > > > $ cd opal/mca/memory/ptmalloc2 > > > $ make > > > /bin/sh ../../../../libtool --tag=CC --mode=link pgcc -O -DNDEBUG > > > -tp=k8-32 -export-dynamic -o libopenmpi-malloc.la -rpath > > > /opt/SUNWhpc/HPC8.2/pgi/lib malloc.lo malloc-stats.lo -lnsl -lutil > > > -lpthread > > > libtool: link: pgcc -shared -fpic -DPIC .libs/malloc.o > > > .libs/malloc-stats.o -lnsl -lutil -lpthread -lc -Wl,-soname > > > -Wl,libopenmpi-malloc.so.0 -o .libs/libopenmpi-malloc.so.0.0.0 > > > /usr/bin/ld: warning: i386 architecture of input file `.libs/malloc.o' > > > is incompatible with i386:x86-64 output > > > /usr/bin/ld: warning: i386 architecture of input file > > > `.libs/malloc-stats.o' is incompatible with i386:x86-64 output > > > .libs/malloc.o(.text+0xcb3): In function `realloc_check': > > > : undefined reference to `opal_memcpy_base_module' > > > .libs/malloc.o(.text+0x14e3): In function `munmap_chunk': > > > : undefined reference to `opal_mem_free_ptmalloc2_munmap' > > > .libs/malloc.o(.text+0x1560): In function `mremap_chunk': > > > : undefined reference to `opal_mem_hooks_release_hook' > > > .libs/malloc.o(.text+0x2be2): In function `_int_free': > > > : undefined reference to `opal_mem_free_ptmalloc2_munmap' > > > .libs/malloc.o(.text+0x30ae): In function `_int_realloc': > > > : undefined reference to `opal_mem_hooks_release_hook' > > > .libs/malloc.o(.text+0x3c2a): In function > > > `opal_mem_free_ptmalloc2_sbrk': > > > : undefined reference to `opal_mem_hooks_release_hook' > > > .libs/malloc.o(.text+0x3fab): In function `ptmalloc_init': > > > : undefined reference to `opal_mem_hooks_set_support' > > > .libs/malloc.o(.text+0x40ad): In function `new_heap': > > > : undefined reference to `opal_mem_free_ptmalloc2_munmap' > > > .libs/malloc.o(.text+0x40d5): In function `new_heap': > > > : undefined reference to `opal_mem_free_ptmalloc2_munmap' > > > .libs/malloc.o(.text+0x414f): In function `new_heap': > > > : undefined reference to `opal_mem_free_ptmalloc2_munmap' > > > .libs/malloc.o(.text+0x4198): In function `new_heap': > > > : undefined reference to `opal_mem_free_ptmalloc2_munmap' > > > .libs/malloc.o(.text+0x4282): In function `heap_trim': > > > : undefined reference to `opal_mem_free_ptmalloc2_munmap' > > > .libs/malloc.o(.text+0x44aa): In function `arena_get2': > > > : undefined reference to `opal_atomic_wmb' > > > make: *** [libopenmpi-malloc.la] Error 2 > > > > > > -Ethan > > > _______________________________________________ > > > users mailing list > > > us...@open-mpi.org > > > http://www.open-mpi.org/mailman/listinfo.cgi/users > > _______________________________________________ > > users mailing list > > us...@open-mpi.org > > http://www.open-mpi.org/mailman/listinfo.cgi/users > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
