you can use full path to mpirun, you can also set prefix $mpirun -prefix path/to/mpi/home -np ..... Lenny.
On Sun, Oct 18, 2009 at 12:03 PM, Oswald Benedikt <benedikt.osw...@psi.ch>wrote: > Hi, thanks, that's what puzzled when I saw the reference to 1.3, but the > LD_LIBRARY_PATH was set to point > to the respective version, i.e. 1.3.2 or 1.3.3 and the 1.3 executables were > not in the PATH. > > Are there any other env variables or . files that need to be set ? > > Benedikt > > > -----Original Message----- > From: users-boun...@open-mpi.org on behalf of Ralph Castain > Sent: Sun 18.10.2009 6:04 > To: Open MPI Users > Subject: Re: [OMPI users] mpirun failure > > Looks to me like you may be picking up an earlier version when you > launch. At least, when I look at the error message, it says that it > came from a file in the openmpi-1.3 directory tree. Yet you say you > installed 1.3.2 and 1.3.3. > > Any chance your ld_library_path is pointing at the older version? > > > On Oct 17, 2009, at 11:29 AM, Oswald Benedikt wrote: > > > Dear open-mpi users / developers, maybe this problem has been > > treated before but at least I can not find it: > > > > I have tried both open mpi 1.3.2 and 1.3.3 on Mac OS X (10.5.8). > > Compilation and installation of openmpi > > works well, also compilation and linking of users applications. > > However, when I want to start an application > > with mpirun, it crashes, both for open mpi 1.3.3. and 1.3.2 as > > follows: > > > > > > > > benedikt-oswalds-macbook-pro:mieScatteringDispersive benediktoswald$ > > mpirun -np 2 ../../../hades3d/hades3d --option- > > file=mieScatteringDispersive.job > > [benedikt-oswalds-macbook-pro.local:50793] [[7314,1],0] > > ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/ > > mca/ess/env/ess_env_module.c at line 235 > > [benedikt-oswalds-macbook-pro.local:50793] [[7314,1],0] > > ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/ > > mca/ess/env/ess_env_module.c at line 261 > > [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] > > ORTE_ERROR_LOG: Value out of bounds in file ../../../../openmpi-1.3/ > > orte/mca/ess/base/ess_base_nidmap.c at line 153 > > [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] > > ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/ > > mca/ess/env/ess_env_module.c at line 235 > > [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] > > ORTE_ERROR_LOG: Value out of bounds in file ../../../../openmpi-1.3/ > > orte/mca/ess/base/ess_base_nidmap.c at line 153 > > [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] > > ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/ > > mca/ess/env/ess_env_module.c at line 261 > > > -------------------------------------------------------------------------- > > It looks like MPI_INIT failed for some reason; your parallel process > > is > > likely to abort. There are many reasons that a parallel process can > > fail during MPI_INIT; some of which are due to configuration or > > environment > > problems. This failure appears to be an internal failure; here's some > > additional information (which may only be relevant to an Open MPI > > developer): > > > > orte_grpcomm_modex failed > > --> Returned "Not found" (-13) instead of "Success" (0) > > > -------------------------------------------------------------------------- > > *** An error occurred in MPI_Init > > *** before MPI was initialized > > *** MPI_ERRORS_ARE_FATAL (your MPI job will now abort) > > [benedikt-oswalds-macbook-pro.local:50794] Abort before MPI_INIT > > completed successfully; not able to guarantee that all other > > processes were killed! > > [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] > > ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/ > > mca/ess/env/ess_env_module.c at line 297 > > [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] > > ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/ > > mca/grpcomm/bad/grpcomm_bad_module.c at line 559 > > > -------------------------------------------------------------------------- > > mpirun has exited due to process rank 1 with PID 50794 on > > node benedikt-oswalds-macbook-pro.local exiting without calling > > "finalize". This may > > have caused other processes in the application to be > > terminated by signals sent by mpirun (as reported here). > > > -------------------------------------------------------------------------- > > > > > > Can anyone comment on this ? Is this a basic installation or path > > problem ? > > > > openmpi 1.3 does not show this problem. > > > > Thanks, Benedikt > > > > > > > > > > > ------------------------------------------------------------------------------------------------------------------ > > Benedikt Oswald, Dr. sc. techn., dipl. El. Ing. ETH, www.psi.ch, > > Computational Accelerator Scientist > > Paul Scherrer Institute (PSI), CH-5232 Villigen, Suisse, > benedikt.osw...@psi.ch > > , +41(0)56 310 32 12 > > "Passion is required for any great work, and for the Revolution > > passion and audacity are required in big doses.", > > Ernesto 'Che' Guevara, Letter to his parents. > > http://maxwell.psi.ch/amaswiki/index.php/User:BenediktOswald > > > ------------------------------------------------------------------------------------------------------------------ > > > > > > > > _______________________________________________ > > users mailing list > > us...@open-mpi.org > > http://www.open-mpi.org/mailman/listinfo.cgi/users > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users >
