I have also put the 1.3.3 version (gfortran) on the path: #For openmpi-1.2.6 Intel compiler
if [ "$LD_LIBRARY_PATH" ] ; then export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/usr/local/lib" else export LD_LIBRARY_PATH="/usr/local/lib" fi #For openmpi-1.3.3 gnu (gfortran) compiled if [ "$LD_LIBRARY_PATH" ] ; then export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/opt/lib" else export LD_LIBRARY_PATH="/opt/lib" fi if [ "$PATH" ] ; then export PATH="$PATH:/opt/bin" else export PATH="/opt/bin" fi (while "export PATH=.... does not work here) now francesco@tya64:~$ $PATH bash: /opt/etsf/bin:/usr/local/delphi_4.1.1:/opt/intel/cce/10.1.015/bin:/opt/intel/fce/10.1.015/bin:/usr/local/bin/vmd:/usr/local/chimera/bin:/opt/etsf/bin:/usr/local/delphi_4.1.1:/opt/intel/cce/10.1.015/bin:/opt/intel/fce/10.1.015/bin:/usr/local/bin/vmd:/usr/local/chimera/bin:/opt/etsf/bin:/usr/local/delphi_4.1.1:/opt/intel/cce/10.1.015/bin:/opt/intel/fce/10.1.015/bin:/usr/local/bin/vmd:/usr/local/chimera/bin:/usr/local/bin:/usr/bin:/bin:/usr/games:/home/francesco/hole2/exe:/opt/bin:/usr/local/amber10/exe:/usr/local/dock6/bin:/home/francesco/hole2/exe:/opt/bin:/usr/local/amber10/exe:/usr/local/dock6/bin:/home/francesco/hole2/exe:/opt/bin:/usr/local/amber10/exe:/usr/local/dock6/bin: No such file or directory francesco@tya64:~$ To get info, I have to command $ /opt/bin/ompi_info which reports correctly. $ ompi_info reports about previous installation of 1.2.6 version (intel). Is this situation correct for compiling a program with FC=/opt/bin/mpif90 CC=/opt/bin/mpicc etcetera ? How getting the runtime for the compiled program? I am asking all that because I have problems in the compilation, so that I want first rule out that problems may derive from openmpi. Thanks indeed francesco pietra ---------- Forwarded message ---------- From: Francesco Pietra <chiendar...@gmail.com> List-Post: users@lists.open-mpi.org Date: Thu, Oct 22, 2009 at 7:28 PM Subject: installation with two different compilers To: Open MPI Users <us...@open-mpi.org> Hi: Sure there is the howto somewhere, though not found. With Debian Linux amd64 lenny I have a working installation of openmpi-1.2.6, intel compiled, mpif90 etc in /usr/local/bin. For program OCTOPUS I need gfortran-compiled openmpi. I did so with openmpi-1.3.3, mpif90 etc (as symlink to /opt/bin/opal_wrapper) in /opt/bin. The compilation was carried out as follows: ./configure --prefix=/opt FC=/usr/bin/gfortran F77=/usr/bin/gfortran CC=/usr/bin/gcc CXX=/usr/bin/g++ --with-libnuma=/usr/lib As I am the only user, I use to place everything in my .bashrc. Specifically, #For openmpi-1.2.6 Intel compiler if [ "$LD_LIBRARY_PATH" ] ; then export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/usr/local/lib" else export LD_LIBRARY_PATH="/usr/local/lib" fi #For openmpi-1.3.3 gnu (gfortran) compiled if [ "$LD_LIBRARY_PATH" ] ; then export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/opt/lib" else export LD_LIBRARY_PATH="/opt/lib" fi Command $ompi_info always reports about the intel compiled. How can I have info about the gfortran compiled (and runtime) ? If relevant: francesco@tya64:~$ $PATH bash: /opt/etsf/bin:/usr/local/delphi_4.1.1:/opt/intel/cce/10.1.015/bin:/opt/intel/fce/10.1.015/bin:/usr/local/bin/vmd:/usr/local/chimera/bin:/opt/etsf/bin:/usr/local/delphi_4.1.1:/opt/intel/cce/10.1.015/bin:/opt/intel/fce/10.1.015/bin:/usr/local/bin/vmd:/usr/local/chimera/bin:/opt/etsf/bin:/usr/local/delphi_4.1.1:/opt/intel/cce/10.1.015/bin:/opt/intel/fce/10.1.015/bin:/usr/local/bin/vmd:/usr/local/chimera/bin:/usr/local/bin:/usr/bin:/bin:/usr/games:/home/francesco/hole2/exe:/usr/local/amber10/exe:/usr/local/dock6/bin:/home/francesco/hole2/exe:/usr/local/amber10/exe:/usr/local/dock6/bin:/home/francesco/hole2/exe:/usr/local/amber10/exe:/usr/local/dock6/bin: No such file or directory francesco@tya64:~$ francesco@tya64:~$ $LD_LIBRARY_PATH bash: /opt/intel/mkl/10.0.1.014/lib/em64t:/opt/intel/cce/10.1.015/lib:/opt/intel/fce/10.1.015/lib:/opt/intel/mkl/10.0.1.014/lib/em64t:/opt/intel/cce/10.1.015/lib:/opt/intel/fce/10.1.015/lib:/usr/local/lib:/opt/lib:/opt/acml4.2.0/gfortran64_mp_int64/lib:/usr/local/lib:/opt/lib:/opt/acml4.2.0/gfortran64_mp_int64/lib: No such file or directory francesco@tya64:~$ I do not understand this "No such file or directory"; the library exists. Surely there is something wrong with my handling. Under these conditions the parallel ./configure of OCTOPUS with export FC=/opt/bin/mpif90 export CC=/opt/bin/mpicc (C++ is not used) reports errors of the type: configure:5478: /opt/bin/mpicc -E conftest.c conftest.c:13:28: error: ac_nonexistent.h: No such file or directory and $ make fails, finding a lot of problems with mpi: ...... /usr/lib/libmpi.so: undefined reference to `orte_data_value_t_class' /usr/lib/libmpi.so: undefined reference to `opal_progress_event_increment' /usr/lib/libmpi_f77.so: undefined reference to `mpi_conversion_fn_null__' /usr/lib/libmpi.so: undefined reference to `opal_progress_events' /usr/lib/libmpi.so: undefined reference to `orte_hash_table_set_proc' /usr/lib/libmpi_f77.so: undefined reference to `mpi_conversion_fn_null' /usr/lib/libmpi.so: undefined reference to `orte_gpr' /usr/lib/libmpi.so: undefined reference to `orte_init_stage2' /usr/lib/libmpi.so: undefined reference to `orte_schema' /usr/lib/libmpi.so: undefined reference to `orte_gpr_trigger_t_class' /usr/lib/libmpi_f77.so: undefined reference to `MPI_CONVERSION_FN_NULL' /usr/lib/libmpi.so: undefined reference to `orte_ns' /usr/lib/libmpi_f77.so: undefined reference to `ompi_registered_datareps' /usr/lib/libmpi_f77.so: undefined reference to `mpi_conversion_fn_null_' /usr/lib/libmpi.so: undefined reference to `opal_progress_mpi_init' /usr/lib/libmpi.so: undefined reference to `orte_gpr_base_selected_component' /usr/lib/libmpi.so: undefined reference to `orte_smr' /usr/lib/libmpi.so: undefined reference to `opal_progress_mpi_disable' /usr/lib/libmpi.so: undefined reference to `orte_app_context_map_t_class' /usr/lib/libmpi.so: undefined reference to `orte_ns_name_wildcard' /usr/lib/libmpi.so: undefined reference to `orte_system_info' /usr/lib/libmpi.so: undefined reference to `orte_buffer_t_class' /usr/lib/libmpi.so: undefined reference to `orte_rmgr' /usr/lib/libmpi.so: undefined reference to `opal_progress_event_decrement' /usr/lib/libmpi.so: undefined reference to `orte_hash_table_get_proc' /usr/lib/libmpi.so: undefined reference to `orte_init_stage1' /usr/lib/libmpi.so: undefined reference to `orte_dss' /usr/lib/libmpi.so: undefined reference to `orte_gpr_subscription_t_class' /usr/lib/libmpi.so: undefined reference to `opal_progress_mpi_enable' make[3]: *** [octopus_mpi] Error 1 make[3]: Leaving directory `/home/francesco/octopus/octopus-3.1.0/src/main' make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory `/home/francesco/octopus/octopus-3.1.0/src' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/home/francesco/octopus/octopus-3.1.0' make: *** [all] Error 2 francesco@tya64:~/octopus/octopus-3.1.0$ Thanks for help francesco pietra
