Also, i'm not entirely sure what all the commands are that you are showing. Some of those warnings (eg in config.log) are normal.
The 32 bit test failure is not, though. Terry - any idea there? Sent from my PDA. No type good. On Oct 21, 2010, at 6:25 AM, "Terry Dontje" <terry.don...@oracle.com> wrote: > I wonder if the error below be due to crap being left over in the source > tree. Can you do a "make clean". Note on a new checkout from the v1.5 svn > branch I was able to build 64 bit with the following configure line: > > ../configure FC=f95 F77=f77 CC=cc CXX=CC --without-openib --without-udapl > -enable-heterogeneous --enable-cxx-exceptions --enable-shared > --enable-orterun-prefix-by-default --with-sge --disable-mpi-threads > --enable-mpi-f90 --with-mpi-f90-size=small --disable-progress-threads > --prefix=/workspace/tdd/ctnext/v15 CFLAGS=-m64 CXXFLAGS=-m64 FFLAGS=-m64 > FCFLAGS=-m64 > > --td > On 10/21/2010 05:38 AM, Siegmar Gross wrote: >> >> Hi, >> >> thank you very much for your reply. >> >>> Can you remove the -with-threads and -enable-mpi-threads options from >>> the configure line and see if that helps your 32 bit problem any? >> I cannot build the package when I remove these options. >> >> linpc4 openmpi-1.5-Linux.x86_64.32_cc 189 head -8 config.log >> This file contains any messages produced by compilers while >> running configure, to aid debugging if configure makes a mistake. >> >> It was created by Open MPI configure 1.5, which was >> generated by GNU Autoconf 2.65. Invocation command line was >> >> $ ../openmpi-1.5/configure --prefix=/usr/local/openmpi-1.5_32_cc >> CFLAGS=-m32 CXXFLAGS=-m32 FFLAGS=-m32 FCFLAGS=-m32 CXXLDFLAGS=-m32 >> CPPFLAGS= LDFLAGS=-m32 C_INCL_PATH= C_INCLUDE_PATH= CPLUS_INCLUDE_PATH= >> OBJC_INCLUDE_PATH= MPICHHOME= CC=cc CXX=CC F77=f95 FC=f95 >> --without-udapl --enable-shared --enable-heterogeneous >> --enable-cxx-exceptions >> >> >> linpc4 openmpi-1.5-Linux.x86_64.32_cc 190 head -8 ../*.old/config.log >> This file contains any messages produced by compilers while >> running configure, to aid debugging if configure makes a mistake. >> >> It was created by Open MPI configure 1.5, which was >> generated by GNU Autoconf 2.65. Invocation command line was >> >> $ ../openmpi-1.5/configure --prefix=/usr/local/openmpi-1.5_32_cc >> CFLAGS=-m32 CXXFLAGS=-m32 FFLAGS=-m32 FCFLAGS=-m32 CXXLDFLAGS=-m32 >> CPPFLAGS= LDFLAGS=-m32 C_INCL_PATH= C_INCLUDE_PATH= CPLUS_INCLUDE_PATH= >> OBJC_INCLUDE_PATH= MPICHHOME= CC=cc CXX=CC F77=f95 FC=f95 >> --without-udapl --with-threads=posix --enable-mpi-threads >> --enable-shared --enable-heterogeneous --enable-cxx-exceptions >> >> >> linpc4 openmpi-1.5-Linux.x86_64.32_cc 194 dir log.* ../*.old/log.* >> ... 132406 Oct 19 13:01 >> ../openmpi-1.5-Linux.x86_64.32_cc.old/log.configure.Linux.x86_64.32_cc >> ... 195587 Oct 19 16:09 >> ../openmpi-1.5-Linux.x86_64.32_cc.old/log.make-check.Linux.x86_64.32_cc >> ... 356672 Oct 19 16:07 >> ../openmpi-1.5-Linux.x86_64.32_cc.old/log.make-install.Linux.x86_64.32_cc >> ... 280596 Oct 19 13:42 >> ../openmpi-1.5-Linux.x86_64.32_cc.old/log.make.Linux.x86_64.32_cc >> ... 132265 Oct 21 10:51 log.configure.Linux.x86_64.32_cc >> ... 10890 Oct 21 10:51 log.make.Linux.x86_64.32_cc >> >> >> linpc4 openmpi-1.5-Linux.x86_64.32_cc 195 grep -i warning: >> log.configure.Linux.x86_64.32_cc >> configure: WARNING: *** Did not find corresponding C type >> configure: WARNING: MPI_REAL16 and MPI_COMPLEX32 support have been disabled >> configure: WARNING: *** Corresponding Fortran 77 type (REAL*16) not supported >> configure: WARNING: *** Skipping Fortran 90 type (REAL*16) >> configure: WARNING: valgrind.h not found >> configure: WARNING: Unknown architecture ... proceeding anyway >> configure: WARNING: File locks may not work with NFS. See the Installation >> and >> configure: WARNING: -xldscope=hidden has been added to CFLAGS >> >> linpc4 openmpi-1.5-Linux.x86_64.32_cc 196 grep -i warning: >> ../*.old/log.configure.Linux.x86_64.32_cc >> configure: WARNING: *** Did not find corresponding C type >> configure: WARNING: MPI_REAL16 and MPI_COMPLEX32 support have been disabled >> configure: WARNING: *** Corresponding Fortran 77 type (REAL*16) not supported >> configure: WARNING: *** Skipping Fortran 90 type (REAL*16) >> configure: WARNING: valgrind.h not found >> configure: WARNING: Unknown architecture ... proceeding anyway >> configure: WARNING: File locks may not work with NFS. See the Installation >> and >> configure: WARNING: -xldscope=hidden has been added to CFLAGS >> >> linpc4 openmpi-1.5-Linux.x86_64.32_cc 197 grep -i error: >> log.configure.Linux.x86_64.32_cc >> configure: error: no libz found; check path for ZLIB package first... >> configure: error: no vtf3.h found; check path for VTF3 package first... >> configure: error: no BPatch.h found; check path for Dyninst package first... >> configure: error: no f2c.h found; check path for CLAPACK package first... >> configure: error: MPI Correctness Checking support cannot be built inside >> Open >> MPI >> configure: error: no papi.h found; check path for PAPI package first... >> configure: error: no libcpc.h found; check path for CPC package first... >> configure: error: no ctool/ctool.h found; check path for CTool package >> first... >> >> linpc4 openmpi-1.5-Linux.x86_64.32_cc 198 grep -i error: >> ../*.old/log.configure.Linux.x86_64.32_cc >> configure: error: no libz found; check path for ZLIB package first... >> configure: error: no vtf3.h found; check path for VTF3 package first... >> configure: error: no BPatch.h found; check path for Dyninst package first... >> configure: error: no f2c.h found; check path for CLAPACK package first... >> configure: error: MPI Correctness Checking support cannot be built inside >> Open >> MPI >> configure: error: no papi.h found; check path for PAPI package first... >> configure: error: no libcpc.h found; check path for CPC package first... >> configure: error: no ctool/ctool.h found; check path for CTool package >> first... >> linpc4 openmpi-1.5-Linux.x86_64.32_cc 199 >> >> >> linpc4 openmpi-1.5-Linux.x86_64.32_cc 199 grep -i warning: >> log.make.Linux.x86_64.32_cc >> linpc4 openmpi-1.5-Linux.x86_64.32_cc 200 grep -i warning: >> ../*.old/log.make.Linux.x86_64.32_cc >> ".../opal/mca/crs/none/crs_none_module.c", line 136: warning: >> statement not reached >> ".../orte/mca/errmgr/errmgr.h", line 135: warning: attribute >> "noreturn" may not be applied to variable, ignored >> ... (much more warnings for errmgr.h, line 135) >> ".../orte/tools/orte-ps/orte-ps.c", line 288: warning: initializer >> does not fit or is out of range: 0xfffffffe >> ".../orte/tools/orte-ps/orte-ps.c", line 289: warning: initializer >> does not fit or is out of range: 0xfffffffe >> ... >> f95: Warning: Option -rpath passed to ld, if ld is invoked, >> ignored otherwise >> ... >> ".../ompi/mca/io/romio/romio/adio/common/ad_fstype.c", line 397: >> warning: statement not reached >> ".../ompi/mca/osc/rdma/osc_rdma_data_move.c", line 296: >> warning: statement not reached >> ".../ompi/mca/osc/rdma/osc_rdma_data_move.c", line 678: >> warning: statement not reached >> ".../ompi/mca/pml/cm/pml_cm_cancel.c", line 65: warning: >> statement not reached >> ... >> CC: Warning: Specify a supported level of optimization when using >> -xopenmp, -xopenmp will not set an optimization level in a >> future release. Optimization level changed to 3 to support -xopenmp. >> ... (a lot more of these warnings) >> cc: Warning: Optimizer level changed from 0 to 3 to support >> parallelized code. >> ... >> >> Above you have all different warnings if I didn't miss one. >> >> >> linpc4 openmpi-1.5-Linux.x86_64.32_cc 201 grep -i error: >> log.make.Linux.x86_64.32_cc cc1: error: unrecognized command line >> option "-fno-directives-only" >> linpc4 openmpi-1.5-Linux.x86_64.32_cc 202 grep -i error: >> ../*.old/log.make.Linux.x86_64.32_cc >> linpc4 openmpi-1.5-Linux.x86_64.32_cc 203 >> >> >> linpc4 openmpi-1.5-Linux.x86_64.32_cc 205 tail -15 >> log.make.Linux.x86_64.32_cc >> make[3]: Leaving directory `/.../opal/libltdl' >> make[2]: Leaving directory `/.../opal/libltdl' >> Making all in asm >> make[2]: Entering directory `/.../opal/asm' >> CC asm.lo >> rm -f atomic-asm.S >> ln -s ".../opal/asm/generated/atomic-ia32-linux-nongas.s" atomic-asm.S >> CPPAS atomic-asm.lo >> cc1: error: unrecognized command line option "-fno-directives-only" >> cc: cpp failed for atomic-asm.S >> make[2]: *** [atomic-asm.lo] Error 1 >> make[2]: Leaving directory `/.../opal/asm' >> make[1]: *** [all-recursive] Error 1 >> make[1]: Leaving directory `/.../opal' >> make: *** [all-recursive] Error 1 >> >> >> It is the same error which I reported yesterday for "Linux x86_64, >> Oracle/Sun C, 64-bit). >> >> Please let me know if you need anything else. >> >> >> Kind regards >> >> Siegmar >> >> >>> --td >>> On 10/20/2010 09:38 AM, Siegmar Gross wrote: >>>> Hi, >>>> >>>> I have built Open MPI 1.5 on Linux x86_64 with the Oracle/Sun Studio C >>>> compiler. Unfortunately "mpiexec" breaks when I run a small propgram. >>>> >>>> linpc4 small_prog 106 cc -V >>>> cc: Sun C 5.10 Linux_i386 2009/06/03 >>>> usage: cc [ options] files. Use 'cc -flags' for details >>>> >>>> linpc4 small_prog 107 uname -a >>>> Linux linpc4 2.6.27.45-0.1-default #1 SMP 2010-02-22 16:49:47 +0100 x86_64 >>>> x86_64 x86_64 GNU/Linux >>>> >>>> linpc4 small_prog 108 mpicc -show >>>> cc -I/usr/local/openmpi-1.5_32_cc/include -mt >>>> -L/usr/local/openmpi-1.5_32_cc/lib -lmpi -ldl -Wl,--export-dynamic -lnsl >>>> -lutil -lm -ldl >>>> >>>> linpc4 small_prog 109 mpicc -m32 rank_size.c >>>> linpc4 small_prog 110 mpiexec -np 2 a.out >>>> I'm process 0 of 2 available processes running on linpc4. >>>> MPI standard 2.1 is supported. >>>> I'm process 1 of 2 available processes running on linpc4. >>>> MPI standard 2.1 is supported. >>>> [linpc4:11564] *** Process received signal *** >>>> [linpc4:11564] Signal: Segmentation fault (11) >>>> [linpc4:11564] Signal code: (128) >>>> [linpc4:11564] Failing at address: (nil) >>>> [linpc4:11565] *** Process received signal *** >>>> [linpc4:11565] Signal: Segmentation fault (11) >>>> [linpc4:11565] Signal code: (128) >>>> [linpc4:11565] Failing at address: (nil) >>>> [linpc4:11564] [ 0] [0xffffe410] >>>> [linpc4:11564] [ 1] /usr/local/openmpi-1.5_32_cc/lib/libmpi.so.1 >>>> (mca_base_components_close+0x8c) [0xf774ccd0] >>>> [linpc4:11564] [ 2] /usr/local/openmpi-1.5_32_cc/lib/libmpi.so.1 >>>> (mca_btl_base_close+0xc5) [0xf76bd255] >>>> [linpc4:11564] [ 3] /usr/local/openmpi-1.5_32_cc/lib/libmpi.so.1 >>>> (mca_bml_base_close+0x32) [0xf76bd112] >>>> [linpc4:11564] [ 4] /usr/local/openmpi-1.5_32_cc/lib/openmpi/ >>>> mca_pml_ob1.so [0xf73d971f] >>>> [linpc4:11564] [ 5] /usr/local/openmpi-1.5_32_cc/lib/libmpi.so.1 >>>> (mca_base_components_close+0x8c) [0xf774ccd0] >>>> [linpc4:11564] [ 6] /usr/local/openmpi-1.5_32_cc/lib/libmpi.so.1 >>>> (mca_pml_base_close+0xc1) [0xf76e4385] >>>> [linpc4:11564] [ 7] /usr/local/openmpi-1.5_32_cc/lib/libmpi.so.1 >>>> [0xf76889e6] >>>> [linpc4:11564] [ 8] /usr/local/openmpi-1.5_32_cc/lib/libmpi.so.1 >>>> (PMPI_Finalize+0x3c) [0xf769dd4c] >>>> [linpc4:11564] [ 9] a.out(main+0x98) [0x8048a18] >>>> [linpc4:11564] [10] /lib/libc.so.6(__libc_start_main+0xe5) [0xf749c705] >>>> [linpc4:11564] [11] a.out(_start+0x41) [0x8048861] >>>> [linpc4:11564] *** End of error message *** >>>> [linpc4:11565] [ 0] [0xffffe410] >>>> [linpc4:11565] [ 1] /usr/local/openmpi-1.5_32_cc/lib/libmpi.so.1 >>>> (mca_base_components_close+0x8c) [0xf76bccd0] >>>> [linpc4:11565] [ 2] /usr/local/openmpi-1.5_32_cc/lib/libmpi.so.1 >>>> (mca_btl_base_close+0xc5) [0xf762d255] >>>> [linpc4:11565] [ 3] /usr/local/openmpi-1.5_32_cc/lib/libmpi.so.1 >>>> (mca_bml_base_close+0x32) [0xf762d112] >>>> [linpc4:11565] [ 4] /usr/local/openmpi-1.5_32_cc/lib/openmpi/ >>>> mca_pml_ob1.so [0xf734971f] >>>> [linpc4:11565] [ 5] /usr/local/openmpi-1.5_32_cc/lib/libmpi.so.1 >>>> (mca_base_components_close+0x8c) [0xf76bccd0] >>>> [linpc4:11565] [ 6] /usr/local/openmpi-1.5_32_cc/lib/libmpi.so.1 >>>> (mca_pml_base_close+0xc1) [0xf7654385] >>>> [linpc4:11565] [ 7] /usr/local/openmpi-1.5_32_cc/lib/libmpi.so.1 >>>> [0xf75f89e6] >>>> [linpc4:11565] [ 8] /usr/local/openmpi-1.5_32_cc/lib/libmpi.so.1 >>>> (PMPI_Finalize+0x3c) [0xf760dd4c] >>>> [linpc4:11565] [ 9] a.out(main+0x98) [0x8048a18] >>>> [linpc4:11565] [10] /lib/libc.so.6(__libc_start_main+0xe5) [0xf740c705] >>>> [linpc4:11565] [11] a.out(_start+0x41) [0x8048861] >>>> [linpc4:11565] *** End of error message *** >>>> -------------------------------------------------------------------------- >>>> mpiexec noticed that process rank 0 with PID 11564 on node linpc4 exited >>>> on signal 11 (Segmentation fault). >>>> -------------------------------------------------------------------------- >>>> 2 total processes killed (some possibly by mpiexec during cleanup) >>>> linpc4 small_prog 111 >>>> >>>> >>>> "make check" shows that one test failed. >>>> >>>> linpc4 openmpi-1.5-Linux.x86_64.32_cc 114 grep FAIL >>>> log.make-check.Linux.x86_64.32_cc >>>> FAIL: opal_path_nfs >>>> linpc4 openmpi-1.5-Linux.x86_64.32_cc 115 grep PASS >>>> log.make-check.Linux.x86_64.32_cc >>>> PASS: predefined_gap_test >>>> PASS: dlopen_test >>>> PASS: atomic_barrier >>>> PASS: atomic_barrier_noinline >>>> PASS: atomic_spinlock >>>> PASS: atomic_spinlock_noinline >>>> PASS: atomic_math >>>> PASS: atomic_math_noinline >>>> PASS: atomic_cmpset >>>> PASS: atomic_cmpset_noinline >>>> decode [PASSED] >>>> PASS: opal_datatype_test >>>> PASS: checksum >>>> PASS: position >>>> decode [PASSED] >>>> PASS: ddt_test >>>> decode [PASSED] >>>> PASS: ddt_raw >>>> linpc4 openmpi-1.5-Linux.x86_64.32_cc 116 >>>> >>>> I used the following command to build the package. >>>> >>>> ../openmpi-1.5/configure --prefix=/usr/local/openmpi-1.5_32_cc \ >>>> CFLAGS="-m32" CXXFLAGS="-m32" FFLAGS="-m32" FCFLAGS="-m32" \ >>>> CXXLDFLAGS="-m32" CPPFLAGS="" \ >>>> LDFLAGS="-m32" \ >>>> C_INCL_PATH="" C_INCLUDE_PATH="" CPLUS_INCLUDE_PATH="" \ >>>> OBJC_INCLUDE_PATH="" MPICHHOME="" \ >>>> CC="cc" CXX="CC" F77="f95" FC="f95" \ >>>> --without-udapl --with-threads=posix --enable-mpi-threads \ >>>> --enable-shared --enable-heterogeneous --enable-cxx-exceptions \ >>>> |& tee log.configure.$SYSTEM_ENV.$MACHINE_ENV.32_cc >>>> >>>> I have also built the package with gcc-4.2.0 and it seems to work >>>> although the nfs-test failed as well. Therefore I'm not sure if >>>> the failing test is responsible for the failure with the cc-version. >>>> >>>> ../openmpi-1.5/configure --prefix=/usr/local/openmpi-1.5_32_gcc \ >>>> CFLAGS="-m32" CXXFLAGS="-m32" FFLAGS="-m32" FCFLAGS="-m32" \ >>>> CXXLDFLAGS="-m32" CPPFLAGS="" \ >>>> LDFLAGS="-m32" \ >>>> C_INCL_PATH="" C_INCLUDE_PATH="" CPLUS_INCLUDE_PATH="" \ >>>> OBJC_INCLUDE_PATH="" MPIHOME="" \ >>>> CC="gcc" CPP="cpp" CXX="g++" CXXCPP="cpp" F77="gfortran" \ >>>> --without-udapl --with-threads=posix --enable-mpi-threads \ >>>> --enable-shared --enable-heterogeneous --enable-cxx-exceptions \ >>>> |& tee log.configure.$SYSTEM_ENV.$MACHINE_ENV.32_gcc >>>> >>>> linpc4 small_prog 107 gcc -v >>>> Using built-in specs. >>>> Target: x86_64-unknown-linux-gnu >>>> Configured with: ../gcc-4.2.0/configure --prefix=/usr/local/gcc-4.2.0 >>>> --enable-languages=c,c++,java,fortran,objc --enable-java-gc=boehm >>>> --enable-nls --enable-libgcj --enable-threads=posix >>>> Thread model: posix >>>> gcc version 4.2.0 >>>> >>>> linpc4 small_prog 109 mpicc -show >>>> gcc -I/usr/local/openmpi-1.5_32_gcc/include -fexceptions -pthread >>>> -L/usr/local/openmpi-1.5_32_gcc/lib -lmpi -ldl -Wl,--export-dynamic >>>> -lnsl -lutil -lm -ldl >>>> >>>> linpc4 small_prog 110 mpicc -m32 rank_size.c >>>> linpc4 small_prog 111 mpiexec -np 2 a.out >>>> I'm process 0 of 2 available processes running on linpc4. >>>> MPI standard 2.1 is supported. >>>> I'm process 1 of 2 available processes running on linpc4. >>>> MPI standard 2.1 is supported. >>>> >>>> linpc4 small_prog 112 grep FAIL /.../log.make-check.Linux.x86_64.32_gcc >>>> FAIL: opal_path_nfs >>>> linpc4 small_prog 113 grep PASS /.../log.make-check.Linux.x86_64.32_gcc >>>> PASS: predefined_gap_test >>>> PASS: dlopen_test >>>> PASS: atomic_barrier >>>> PASS: atomic_barrier_noinline >>>> PASS: atomic_spinlock >>>> PASS: atomic_spinlock_noinline >>>> PASS: atomic_math >>>> PASS: atomic_math_noinline >>>> PASS: atomic_cmpset >>>> PASS: atomic_cmpset_noinline >>>> decode [PASSED] >>>> PASS: opal_datatype_test >>>> PASS: checksum >>>> PASS: position >>>> decode [PASSED] >>>> PASS: ddt_test >>>> decode [NOT PASSED] >>>> PASS: ddt_raw >>>> linpc4 small_prog 114 >>>> >>>> >>>> I used the following small test program. >>>> >>>> #include<stdio.h> >>>> #include<stdlib.h> >>>> #include "mpi.h" >>>> >>>> int main (int argc, char *argv[]) >>>> { >>>> int ntasks, /* number of parallel tasks >>> >> */ >>> >>>> mytid, /* my task id >>> >> */ >>> >>>> version, subversion, /* version of MPI standard >>> >> */ >>> >>>> namelen; /* length of processor name >>> >> */ >>> >>>> char processor_name[MPI_MAX_PROCESSOR_NAME]; >>>> >>>> MPI_Init (&argc,&argv); >>>> MPI_Comm_rank (MPI_COMM_WORLD,&mytid); >>>> MPI_Comm_size (MPI_COMM_WORLD,&ntasks); >>>> MPI_Get_processor_name (processor_name,&namelen); >>>> printf ("I'm process %d of %d available processes running on %s.\n", >>>> mytid, ntasks, processor_name); >>>> MPI_Get_version (&version,&subversion); >>>> printf ("MPI standard %d.%d is supported.\n", version, subversion); >>>> MPI_Finalize (); >>>> return EXIT_SUCCESS; >>>> } >>>> >>>> >>>> Thank you very much for any help to solve the problem with the >>>> Oracle/Sun Compiler in advance. >>>> >>>> >>>> Best regards >>>> >>>> Siegmar >>>> >>>> _______________________________________________ >>>> users mailing list >>>> us...@open-mpi.org >>>> http://www.open-mpi.org/mailman/listinfo.cgi/users >>> >>> -- >>> Oracle >>> Terry D. Dontje | Principal Software Engineer >>> Developer Tools Engineering | +1.781.442.2631 >>> Oracle * - Performance Technologies* >>> 95 Network Drive, Burlington, MA 01803 >>> Email terry.don...@oracle.com <mailto:terry.don...@oracle.com> >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > > -- > <mime-attachment.gif> > Terry D. Dontje | Principal Software Engineer > Developer Tools Engineering | +1.781.442.2631 > Oracle - Performance Technologies > 95 Network Drive, Burlington, MA 01803 > Email terry.don...@oracle.com > > > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users