Thanks I have downloaded http://padb.googlecode.com/files/padb-3.2-beta1.tar.gz and followed the instructions of INSTALL file and installed it at /mypath/padb32 But, I got: -bash-3.2$ padb -Ormgr=pbs -Q 48279.clusterJob 48279.cluster is not active Actually, the job was running. I have installed bin at /mypath/padb32/bin
libexec at/lustre/jxding/padb32/libexec When I installed it, I used ./configure --prefix=/mypath/padb32 I got ----------------------------- checking for a BSD-compatible install... /usr/bin/install -cchecking whether build environment is sane... yeschecking for a thread-safe mkdir -p... /bin/mkdir -pchecking for gawk... gawkchecking whether make sets $(MAKE)... yeschecking for gcc... gccchecking whether the C compiler works... yeschecking for C compiler default output file name... a.outchecking for suffix of executables...checking whether we are cross compiling... nochecking for suffix of object files... ochecking whether we are using the GNU C compiler... yeschecking whether gcc accepts -g... yeschecking for gcc option to accept ISO C89... none neededchecking for style of include used by make... GNUchecking dependency style of gcc... gcc3checking whether gcc and cc understand -c and -o together... yesconfigure: creating ./config.statusconfig.status: creating Makefileconfig.status: creating src/Makefileconfig.status: executing depfiles commands ------------------------------- -bash-3.2$ makeMaking all in srcmake[1]: Entering directory `/mypath/padb32/padb-3.2-beta1/src'gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"padb\" -DVERSION=\"3.2-beta1\" -I. -Wall -g -O2 -MT minfo-minfo.o -MD -MP -MF .deps/minfo-minfo.Tpo -c -o minfo-minfo.o `test -f 'minfo.c' || echo './'`minfo.cminfo.c: In function âfind_symâ:minfo.c:158: warning: dereferencing type-punned pointer will break strict-aliasing rulesminfo.c: In function âmainâ:minfo.c:649: warning: type-punning to incomplete type might break strict-aliasing rulesminfo.c:650: warning: type-punning to incomplete type might break strict-aliasing rulesmv -f .deps/minfo-minfo.Tpo .deps/minfo-minfo.Pogcc -Wall -g -O2 -ldl -o minfo minfo-minfo.omake[1]: Leaving directory `/mypath/padb32/padb-3.2-beta1/src'make[1]: Entering directory `/mypath/padb32/padb-3.2-beta1'make[1]: Nothing to be done for `all-am'.make[1]: Leaving directory `/mypath/padb32/padb-3.2-beta1'------------------------------------------------- -bash-3.2$ make installMaking install in srcmake[1]: Entering directory `/mypath/padb32/padb-3.2-beta1/src'make[2]: Entering directory `/mypath/padb32/padb-3.2-beta1/src'test -z "/lustre/jxding/padb32/bin" || /bin/mkdir -p "/mypath/padb32/bin" /usr/bin/install -c padb '/lustre/jxding/padb32/bin'test -z "/lustre/jxding/padb32/libexec" || /bin/mkdir -p "/mypath/padb32/libexec" /usr/bin/install -c minfo '/lustre/jxding/padb32/libexec'make[2]: Nothing to be done for `install-data-am'.make[2]: Leaving directory `/mypath/padb32/padb-3.2-beta1/src'make[1]: Leaving directory `/mypath/padb32/padb-3.2-beta1/src'make[1]: Entering directory `/mypath/padb32/padb-3.2-beta1'make[2]: Entering directory `/mypath/padb32/padb-3.2-beta1'make[2]: Nothing to be done for `install-exec-am'.make[2]: Nothing to be done for `install-data-am'.make[2]: Leaving directory `/mypath/padb32/padb-3.2-beta1'make[1]: Leaving directory `/mypath/padb32/padb-3.2-beta1'-bash-3.2$ make installcheckMaking installcheck in srcmake[1]: Entering directory `/mypath/padb32/padb-3.2-beta1/src'make[1]: Nothing to be done for `installcheck'.make[1]: Leaving directory `/mypath/padb32/padb-3.2-beta1/src'make[1]: Entering directory `/mypath/padb32/padb-3.2-beta1'make[1]: Nothing to be done for `installcheck-am'.make[1]: Leaving directory `/mypath/padb32/padb-3.2-beta1'-------------------------------------------------- Are there something wrong with what I have done ? Any help is appreciated. thanks Jack Oct. 25 2010 > From: ash...@pittman.co.uk > Date: Mon, 25 Oct 2010 20:40:18 +0100 > To: us...@open-mpi.org > Subject: Re: [OMPI users] Open MPI program cannot complete > > > On 25 Oct 2010, at 20:18, Jack Bryan wrote: > > > Thanks > > I have downloaded > > http://padb.googlecode.com/files/padb-3.0.tgz > > > > and compile it. > > > > But, no user manual, I can not use it by padb -aQ. > > The -a flag is a shortcut to all jobs, if you are providing a jobid (which is > normally numeric) then don't set the -a flag. > > > Do you have use manual about how to use it ? > > In my previous mail I was assuming you were using orte to launch the jobs but > if you are using PBS then you'll need to use the 3.2 beta as the PBS code is > new, alternatively you could find the host where the PBS script itself runs > and check of the "ompi-ps" command gives you any output, if it does then you > could run it from there giving it the orte jobid. > > A bit of background about resource managers (in which I'm including orte and > PBS), padb supports many resource managers and tries to automatically detect > which ones you have installed on your system. If you don't specify one then > it'll see what is installed, if there is more than one resource manager > installed then it'll see which of them claim to have active jobs - if only > one resource manager meets this criteria then it'll pick that one - hence 99% > of the time it should just work. If more than one resource manager claims to > have active jobs then padb will refuse to run but ask the user to specify one > explicitly. > > You should try the following in order once you have 3.2 installed. > > padb -Ormgr=pbs -Q <myjob> > > Or - find the node where the PBS script is being executed, check that the > ompi-ps command is returning the jobid and then run > > padb -Ormgr=orte -Q <openmpi_jobid> > > Ashley, > > -- > > Ashley Pittman, Bath, UK. > > Padb - A parallel job inspection tool for cluster computing > http://padb.pittman.org.uk > > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
