Hi, I am having a problem in running mpirun over multiple nodes. To run a job over two 8-core processors, I generated a hostfile as follows: yethiraj30 slots=8 max_slots=8 yethiraj31 slots=8 max_slots=8
These two machines are intra-connected and I have installed openmpi 1.3.3. Then If I try to run the replica exchange simulation using the following command: mpirun -np 16 --hostfile hostfile mdrun_4mpi -s topol_.tpr -multi 16 -replex 100 >& log_replica_test But I find following error and job does not proceed at all : btl_tcp_endpoint.c:636:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.0.31 failed: No route to host (113) Here is the full details: NNODES=16, MYRANK=0, HOSTNAME=yethiraj30 NNODES=16, MYRANK=1, HOSTNAME=yethiraj30 NNODES=16, MYRANK=4, HOSTNAME=yethiraj30 NNODES=16, MYRANK=2, HOSTNAME=yethiraj30 NNODES=16, MYRANK=6, HOSTNAME=yethiraj30 NNODES=16, MYRANK=3, HOSTNAME=yethiraj30 NNODES=16, MYRANK=5, HOSTNAME=yethiraj30 NNODES=16, MYRANK=7, HOSTNAME=yethiraj30 [yethiraj30][[22604,1],0][btl_tcp_endpoint.c:636:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.0.31 failed: No route to host (113) [yethiraj30][[22604,1],4][btl_tcp_endpoint.c:636:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.0.31 failed: No route to host (113) [yethiraj30][[22604,1],6][btl_tcp_endpoint.c:636:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.0.31 failed: No route to host (113) [yethiraj30][[22604,1],1][btl_tcp_endpoint.c:636:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.0.31 failed: No route to host (113) [yethiraj30][[22604,1],3][btl_tcp_endpoint.c:636:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.0.31 failed: No route to host (113) [yethiraj30][[22604,1],2][btl_tcp_endpoint.c:636:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.0.31 failed: No route to host (113) NNODES=16, MYRANK=10, HOSTNAME=yethiraj31 NNODES=16, MYRANK=12, HOSTNAME=yethiraj31 I am not sure how to resolve this issue. In general, I can go from one machine to another without any problem using ssh. But, when I am trying to run openmpi over both the machines, I get this error. Any help will be appreciated. Jagannath
