On Jan 26, 2013, at 11:18 PM, #YEO JINGJIE# <jy...@e.ntu.edu.sg> wrote:
> So I should run the job as: > > /usr/lib64/openmpi/bin/mpirun -mca mca_component_show_load_errors 1 -n 16 > /opt/lammps-21Jan13/lmp_linux < zigzag.in > > Is that correct? Yes, thanks - though for our purposes, why don't you simplify it to: /usr/lib64/openmpi/bin/mpirun -mca mca_component_show_load_errors 1 -n 1 hostname > > Regards, > Jingjie Yeo > Ph.D. Student > School of Mechanical and Aerospace Engineering > Nanyang Technological University, Singapore > > ________________________________________ > From: users-boun...@open-mpi.org [users-boun...@open-mpi.org] on behalf of > Ralph Castain [r...@open-mpi.org] > Sent: Sunday, 27 January, 2013 11:58:51 AM > To: Open MPI Users > Subject: Re: [OMPI users] Error when attempting to run LAMMPS on Centos 6.2 > with OpenMPI > > One thing you might try: add "-mca mca_component_show_load_errors 1" to your > mpirun cmd line. This will tell us if the libraries have some missing > dependencies. > > It's the main reason I dislike installing from a package - the package > assumes that your system is configured identically to that of the one used to > generate the package. This is rarely the case - much easier to just download > an OMPI tarball, configure and compile it yourself. > > > On Jan 26, 2013, at 7:32 PM, #YEO JINGJIE# <jy...@e.ntu.edu.sg> wrote: > >> Hi Jeff, >> >> Sorry the original error info was lost along the way, I'm terribly new to >> linux and I am trying to compile OMPI and to run a program, LAMMPS using the >> command: >> >> /usr/lib64/openmpi/bin/mpirun -n 16 /opt/lammps-21Jan13/lmp_linux < zigzag.in >> >> And I received the errors: >> >> [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file ess_hnp_module.c at >> line 194 >> -------------------------------------------------------------------------- >> It looks like orte_init failed for some reason; your parallel process is >> likely to abort. There are many reasons that a parallel process can >> fail during orte_init; some of which are due to configuration or >> environment problems. This failure appears to be an internal failure; >> here's some additional information (which may only be relevant to an >> Open MPI developer): >> orte_plm_base_select failed >> --> Returned value Not found (-13) instead of ORTE_SUCCESS >> -------------------------------------------------------------------------- >> [NTU-2:24127] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file >> runtime/orte_init.c at line 128 >> -------------------------------------------------------------------------- >> It looks like orte_init failed for some reason; your parallel process is >> likely to abort. There are many reasons that a parallel process can >> fail during orte_init; some of which are due to configuration or >> environment problems. This failure appears to be an internal failure; >> here's some additional information (which may only be relevant to an >> Open MPI developer): >> orte_ess_set_name failed >> --> Returned value Not found (-13) instead of ORTE_SUCCESS >> -------------------------------------------------------------------------- >> [NTU-2:24127] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file >> orterun.c at line 616 >> >> >> I have attached the output for "ompi_info --all" in this email. Any advise >> and guidance is greatly appreciated, thank you! >> >> >> Regards, >> Jingjie Yeo >> Ph.D. Student >> School of Mechanical and Aerospace Engineering >> Nanyang Technological University, Singapore >> >> ________________________________________ >> From: users-boun...@open-mpi.org [users-boun...@open-mpi.org] on behalf of >> Jeff Squyres (jsquyres) [jsquy...@cisco.com] >> Sent: Saturday, 26 January, 2013 9:51:43 PM >> To: Open MPI Users >> Subject: Re: [OMPI users] Error when attempting to run LAMMPS on Centos 6.2 >> with OpenMPI >> >> Can you provide more information? You really haven't said *what* the >> problem is that is occurring (even in your followup emails to Ralph). >> Without such information, it is very hard for us to guess what is wrong. >> >> Please send all the information listed here: >> >> http://www.open-mpi.org/community/help/ >> >> >> >> On Jan 25, 2013, at 8:51 PM, #YEO JINGJIE# <jy...@e.ntu.edu.sg> >> wrote: >> >>> I tried to follow the installation instructions over here: >>> >>> http://amusecode.org/doc/install/install-prerequisites-redhat.html >>> >>> And I am using bash and yum. >>> >>> Regards, >>> Jingjie Yeo >>> Ph.D. Student >>> School of Mechanical and Aerospace Engineering >>> Nanyang Technological University, Singapore >>> _______________________________________________ >>> users mailing list >>> us...@open-mpi.org >>> http://www.open-mpi.org/mailman/listinfo.cgi/users >> >> >> -- >> Jeff Squyres >> jsquy...@cisco.com >> For corporate legal information go to: >> http://www.cisco.com/web/about/doing_business/legal/cri/ >> >> >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/users<output.log>_______________________________________________ >> users mailing list >> us...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
