On 5/7/13 7:02 PM, Reuti wrote: > Hi, > > Am 07.05.2013 um 13:36 schrieb Duke Nguyen: > >> I am testing our cluster with module environment, and am having a >> headache to understand openmpi 1.7.2!!! So our system currently has >> openmpi 1.6.3 (at default location /usr/local), 1.6.4 and 1.7.2 compiled >> with intel compilers (installed at /opt/apps). In order to use openmpi >> 1.7.2 for example, I tried: >> >> $ module load mpi/openmpi-1.7.2_composer_xe_2013.3.163 >> $ module load >> apps/abinit-7.2.1_composer_xe_2013.3.163_openmpi-1.7.2_intel_fftw3-mkl >> $ mpirun ./mpihello_intel > > What does: > > $ which mpirun
$ which mpirun /opt/apps/openmpi/openmpi-1.7.2r28341_composer_xe_2013.3.163/usr/local/bin/mpirun > > show? Did you also recompile your application? Yes, I did. That is why abinit has that long's name when I call it using module (abinit-7.2.1_composer_xe_2013.3.163_openmpi-1.7.2_intel_fftw3-mkl -> abinit compiled with intel xe 2013.3.163 and openmpi 1.7.2 and fftw3-mkl; also openmpi 1.7.2 was compiled with intel xe 2013.3.163). > > -- Reuti > > >> mca: base: component_find: unable to open >> /usr/local/lib/openmpi/mca_ess_hnp: >> /usr/local/lib/openmpi/mca_ess_hnp.so: undefined symbol: >> orte_local_jobdata (ignored) >> mca: base: component_find: unable to open >> /usr/local/lib/openmpi/mca_ess_slurm: >> /usr/local/lib/openmpi/mca_ess_slurm.so: undefined symbol: >> orte_orted_exit_with_barrier (ignored) >> mca: base: component_find: unable to open >> /usr/local/lib/openmpi/mca_ess_slurmd: >> /usr/local/lib/openmpi/mca_ess_slurmd.so: undefined symbol: >> orte_pmap_t_class (ignored) >> mpirun: symbol lookup error: >> /usr/local/lib/openmpi/mca_ess_singleton.so: undefined symbol: >> orte_util_setup_local_nidmap_entries >> >> To investigate the error, I tried: >> >> $ echo $LD_LIBRARY_PATH >> /opt/apps/abinit/abinit-7.2.1_composer_xe_2013.3.163_openmpi-1.7.2_intel_fftw3-mkl/usr/local/lib:/opt/apps/openmpi/openmpi-1.7.2r28341_composer_xe_2013.3.163/usr/local/lib/openmpi:/opt/apps/openmpi/openmpi-1.7.2r28341_composer_xe_2013.3.163/usr/local/lib:/usr/local/lib:/opt/intel/lib/intel64:/opt/intel/mkl/lib/intel64 >> $ ls >> /opt/apps/openmpi/openmpi-1.7.2r28341_composer_xe_2013.3.163/usr/local/lib/openmpi >> | grep mca_ess >> mca_ess_env.la >> mca_ess_env.so >> mca_ess_hnp.la >> mca_ess_hnp.so >> mca_ess_singleton.la >> mca_ess_singleton.so >> mca_ess_slurm.la >> mca_ess_slurm.so >> mca_ess_tm.la >> mca_ess_tm.so >> mca_ess_tool.la >> mca_ess_tool.so >> >> So apparently openmpi 1.7.2 looks for the old library at >> /usr/loca/lib/openmpi for 1.6.3 instead of at >> /opt/apps/openmpi/openmpi-1.7.2r28341_composer_xe_2013.3.163/usr/local/lib/openmpi. >> Is there away to force openmpi 1.7.2 look at >> /opt/apps/openmpi/openmpi-1.7.2r28341_composer_xe_2013.3.163/usr/local/lib/openmpi >> first before looking at other locations? >> >> Thanks, >> >> D. >> >> >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users >
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