Apologies if I am not supposed to respond that this worked, but it did! Thank you Tom! You saved me hours of work and I learned something important. Now I have an executable!
Best, Jason On Mon, Jun 24, 2013 at 1:21 PM, Elken, Tom <tom.el...@intel.com> wrote: > I saw a couple of issues noted below …**** > > ** ** > > * * > > ****** > > Now I am still getting some undefined reference errors. Namely:**** > > [root@odie 060911_rmc_eam_gr_vk_t4]# make**** > > ifort -g -debug all -check all -implicitnone -warn all -o rmc_test ran2.o > globals.o read_inputs.o model.o rmc_functions.o scattering_factors.o fem1.o > gr.o eam.o rmc_v_1_0.o -L /export/apps/openmpi_intel_20130618/lib -lmpi** > ** > > *[Tom] * > > *From your makefile below, this compile command is generated by your > DEBUG target. Fixes to the FC_DEBUG command noted below in your makefile… > * > > ** ** > > ifort: warning #10182: disabling optimization; runtime debug checks enabled > **** > > fem1.o: In function `fem':**** > > /state/partition1/home/jjmaldonis/Jinwoo/2011/060911_rmc_eam_gr_vk_t4/fem1.f90:583: > undefined reference to `mpi_reduce_'**** > > /state/partition1/home/jjmaldonis/Jinwoo/2011/060911_rmc_eam_gr_vk_t4/fem1.f90:584: > undefined reference to `mpi_reduce_'**** > > fem1.o: In function `fem_update':**** > > *[Tom] * <snip>**** > > ** ** > > The above undefined reference errors are my problem.**** > > ** ** > > Below are my PATH and LD_LIBRARY_PATH variables, if they are of help.**** > > echo $PATH**** > > > /usr/lib64/qt-3.3/bin:/state/partition1/apps/intel_20130618/composer_xe_2013.3.163/bin/intel64:/state/partition1/apps/intel_20130618/composer_xe_2013.3.163/mpirt/bin/intel64:/state/partition1/apps/intel_20130618/composer_xe_2013.3.163/bin/intel64:/state/partition1/apps/intel_20130618/composer_xe_2013.3.163/bin/intel64_mic:/state/partition1/apps/intel_20130618/composer_xe_2013.3.163/debugger/gui/intel64:/export/apps/intel_20130618/advisor_xe_2013/bin64:/export/apps/intel_20130618/inspector_xe_2013/bin64:/export/apps/intel_20130618/vtune_amplifier_xe_2013/bin64:/usr/local/bin:/bin:/usr/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/usr/java/latest/bin:/opt/maven/bin:/export/apps/openmpi_intel_20130618/:/opt/pdsh/bin:/opt/rocks/bin:/opt/rocks/sbin:/opt/condor/bin:/opt/condor/sbin:/usr/local/samba/sbin:/opt/gridengine/bin/linux-x64:/export/apps/openmpi_intel_20130618/bin/:/usr/local/samba/sbin:/export/apps/openmpi_intel_20130618/bin/ > **** > > *[Tom] * > > *You should try to get* > > /export/apps/openmpi_intel_20130618/bin **** > > *earlier in your path, ahead of this part:* > > > /state/partition1/apps/intel_20130618/composer_xe_2013.3.163/mpirt/bin/intel64 > **** > > *which comes from the intel compilers ‘compilervars.[c]sh’ script and > points to the Intel MPI run-time libraries (which you don’t want, since you > are using Open MPI).* > > *Either that, or use a full path to your OpenMPI/Intel mpirun when you > are ready to run the app., such as: * > > /export/apps/openmpi_intel_20130618/bin/mpirun …. ./rmc_test** > > ** ** > > *[Tom] *<snip>**** > > ** ** > > Below I will paste my makefile, and attached are the compressed > "./configure ..." and "make all install" command logs. Please let me know > anything else that you need.**** > > ** ** > > ** ** > > #**** > > # default makefile for ifort compiler with more or less**** > > # appropriate options for debugging and high performance**** > > #**** > > ** ** > > # application name**** > > APP = rmc_test**** > > ** ** > > # list of source files**** > > SRC = ran2.f90 globals.f90 read_inputs.f90 model.f90 rmc_functions.f90 > scattering_factors.f90 fem1.f90 gr.f90 eam.f90 rmc_v_1_0.f90**** > > ** ** > > # list of object files**** > > OBJ = ran2.o globals.o read_inputs.o model.o rmc_functions.o > scattering_factors.o fem1.o gr.o eam.o rmc_v_1_0.o**** > > ** ** > > # define libraries needed by the linker**** > > LIBS = -L /export/apps/openmpi_intel_20130618/lib -lmpi**** > > *[Tom] * > > *Make this blank, so you will depend on ‘mpif90’ to provide the linking > information:* > > *LIBS =* > > * * > > ** ** > > # -rpath > /state/partition1/apps/intel_20130618/composer_xe_2013.3.163/compiler/lib/ > **** > > ** ** > > # compiler options for debugging**** > > FC_DEBUG = ifort -g -debug all -check all -implicitnone -warn all**** > > *[Tom] You should make this more like your FC_OPT definition, using > mpif90 rather than ifort, such as:* > > *FC_DEBUG = mpif90 -g -debug all -check all -implicitnone -warn all* > > ** ** > > *[Tom] Cheers, Tom***** > > ** ** > > # compiler options for optmized running**** > > #FC_OPT = ifort -O3 -xO -ipo -no-prec-div -static**** > > #FC_OPT = mpif90 -O3 -ipo -static**** > > FC_OPT = mpif90 -O3**** > > ** ** > > # build rules**** > > ** ** > > .SUFFIXES: .f90 .o**** > > .f90.o:**** > > ${FC_DEBUG} -c $<**** > > ** ** > > debug: ${OBJ}**** > > ${FC_DEBUG} -o ${APP} ${OBJ} ${LIBS}**** > > ** ** > > opt: ${SRC}**** > > ${FC_OPT} -o ${APP} ${SRC} ${LIBS}**** > > ** ** > > clean:**** > > rm -f *.mod *.o ${APP}**** > > ln -s /export/apps/openmpi_intel_20130618/lib/mpi.mod ./mpi.mod*** > * > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > >