It is looking for the libcuda.so file, not the libcudart.so file.   So, maybe 
--with-libdir=/usr/lib64
You need to be on a machine with the CUDA driver installed.  What was your 
configure command?

http://www.open-mpi.org/faq/?category=building#build-cuda

Rolf

>-----Original Message-----
>From: users [mailto:users-boun...@open-mpi.org] On Behalf Of Ray
>Sheppard
>Sent: Wednesday, August 14, 2013 2:49 PM
>To: Open MPI Users
>Subject: [OMPI users] Trouble configuring 1.7.2 for Cuda 5.0.35
>
>Hello,
>   When I try to run my configure script, it dies with the following.
>Below it are the actual libraries in the directory. Could the solution be as
>simple as adding "rt" somewhere in the configure script?  Thanks.
>                                          Ray
>
>checking if --with-cuda-libdir is set... not found
>configure: WARNING: Expected file
>/opt/nvidia/cudatoolkit/5.0.35/lib64/libcuda.* not found
>configure: error: Cannot continue
>rsheppar@login1:/N/dc/projects/ray/br2/openmpi-1.7.2> ls -l
>/opt/nvidia/cudatoolkit/5.0.35/lib64/
>total 356284
>lrwxrwxrwx 1 root root        16 Mar 18 14:35 libcublas.so ->
>libcublas.so.5.0
>lrwxrwxrwx 1 root root        19 Mar 18 14:35 libcublas.so.5.0 ->
>libcublas.so.5.0.35
>-rwxr-xr-x 1 root root  58852880 Sep 26  2012 libcublas.so.5.0.35
>-rw-r--r-- 1 root root  21255400 Sep 26  2012 libcublas_device.a
>-rw-r--r-- 1 root root    456070 Sep 26  2012 libcudadevrt.a
>lrwxrwxrwx 1 root root        16 Mar 18 14:35 libcudart.so ->
>libcudart.so.5.0
>lrwxrwxrwx 1 root root        19 Mar 18 14:35 libcudart.so.5.0 ->
>libcudart.so.5.0.35
>-rwxr-xr-x 1 root root    375752 Sep 26  2012 libcudart.so.5.0.35
>lrwxrwxrwx 1 root root        15 Mar 18 14:35 libcufft.so -> libcufft.so.5.0
>lrwxrwxrwx 1 root root        18 Mar 18 14:35 libcufft.so.5.0 ->
>libcufft.so.5.0.35
>-rwxr-xr-x 1 root root  30787712 Sep 26  2012 libcufft.so.5.0.35
>lrwxrwxrwx 1 root root        17 Mar 18 14:35 libcuinj64.so ->
>libcuinj64.so.5.0
>lrwxrwxrwx 1 root root        20 Mar 18 14:35 libcuinj64.so.5.0 ->
>libcuinj64.so.5.0.35
>-rwxr-xr-x 1 root root   1306496 Sep 26  2012 libcuinj64.so.5.0.35
>lrwxrwxrwx 1 root root        16 Mar 18 14:35 libcurand.so ->
>libcurand.so.5.0
>lrwxrwxrwx 1 root root        19 Mar 18 14:35 libcurand.so.5.0 ->
>libcurand.so.5.0.35
>-rwxr-xr-x 1 root root  25281224 Sep 26  2012 libcurand.so.5.0.35
>lrwxrwxrwx 1 root root        18 Mar 18 14:35 libcusparse.so ->
>libcusparse.so.5.0
>lrwxrwxrwx 1 root root        21 Mar 18 14:35 libcusparse.so.5.0 ->
>libcusparse.so.5.0.35
>-rwxr-xr-x 1 root root 132455240 Sep 26  2012 libcusparse.so.5.0.35
>lrwxrwxrwx 1 root root        13 Mar 18 14:35 libnpp.so -> libnpp.so.5.0
>lrwxrwxrwx 1 root root        16 Mar 18 14:35 libnpp.so.5.0 ->
>libnpp.so.5.0.35
>-rwxr-xr-x 1 root root  93602912 Sep 26  2012 libnpp.so.5.0.35
>lrwxrwxrwx 1 root root        20 Mar 18 14:35 libnvToolsExt.so ->
>libnvToolsExt.so.5.0
>lrwxrwxrwx 1 root root        23 Mar 18 14:35 libnvToolsExt.so.5.0 ->
>libnvToolsExt.so.5.0.35
>-rwxr-xr-x 1 root root     31280 Sep 26  2012 libnvToolsExt.so.5.0.35
>
>
>
>--
>                          Respectfully,
>                            Ray Sheppard
>                            rshep...@iu.edu
>                            http://pti.iu.edu/sciapt
>                            317-274-0016
>
>                    Principal Analyst
>                    Senior Technical Lead
>                    Scientific Applications and Performance Tuning
>                    Research Technologies
>                    University Information Technological Services
>                    IUPUI campus
>                    Indiana University
>
>    My "pithy" saying:  Science is the art of translating the world
>        into language. Unfortunately, that language is mathematics.
>    Bumper sticker wisdom: Make it idiot-proof and they will make a
>        better idiot.
>
>_______________________________________________
>users mailing list
>us...@open-mpi.org
>http://www.open-mpi.org/mailman/listinfo.cgi/users
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