Thanks, Ralph.
This is an additional information. Just execute directly on the node without Torque: mpirun -np 8 -report-bindings -mca rmaps lama -mca rmaps_lama_bind 1c Myprog Then it also works, which means the combination of LAMA and Torque would case the problem. Tetsuya Mishima > Okay, so the problem is a bug in LAMA itself. I'll file a ticket and let the LAMA folks look into it. > > On Nov 7, 2013, at 4:18 PM, tmish...@jcity.maeda.co.jp wrote: > > > > > > > Hi Ralph, > > > > I quickly tried 2 runs: > > > > mpirun -report-bindings -bind-to core Myprog > > mpirun -machinefile pbs_hosts -np ${NPROCS} -report-bindings -bind-to core > > Myprog > > > > It works fine in both cases on node03 and node08. > > > > Regards, > > Tetsuya Mishima > > > >> What happens if you drop the LAMA request and instead run > >> > >> mpirun -report-bindings -bind-to core Myprog > >> > >> This would do the same thing - does it work? If so, then we know it is a > > problem in the LAMA mapper. If not, then it is likely a problem in a > > different section of the code. > >> > >> > >> > >> On Nov 7, 2013, at 3:43 PM, tmish...@jcity.maeda.co.jp wrote: > >> > >>> > >>> > >>> Dear openmpi developers, > >>> > >>> I tried the new function LAMA of openmpi-1.7.3 and > >>> unfortunately it is not stable under my environment, which > >>> is built with torque. > >>> > >>> (1) I used 4 scripts as shown below to clarify the problem: > >>> > >>> (COMMON PART) > >>> #!/bin/sh > >>> #PBS -l nodes=node03:ppn=8 / nodes=node08:ppn=8 > >>> export OMP_NUM_THREADS=1 > >>> cd $PBS_O_WORKDIR > >>> cp $PBS_NODEFILE pbs_hosts > >>> NPROCS=`wc -l < pbs_hosts` > >>> > >>> (SCRIPT1) > >>> mpirun -report-bindings -mca rmaps lama -mca rmaps_lama_bind 1c Myprog > >>> (SCRIPT2) > >>> mpirun -oversubscribe -report-bindings -mca rmaps lama \ > >>> -mca rmaps_lama_bind 1c Myprog > >>> (SCRITP3) > >>> mpirun -machinefile pbs_hosts -np ${NPROCS} -oversubscribe \ > >>> -report-bindings -mca rmaps lama -mca rmaps_lama_bind 1c Myprog > >>> (SCRIPT4) > >>> mpirun -machinefile pbs_hosts -np ${NPROCS} -oversubscribe \ > >>> -report-bindings -mca rmaps lama -mca rmaps_lama_bind 1c \ > >>> -mca rmaps_lama_map Nsbnch \ > >>> -mca ess ^tm -mca plm ^tm -mca ras ^tm Myprog > >>> > >>> (2) The results are as follows: > >>> > >>> NODE03(32cores) NODE08(8cores) > >>> SCRIPT1 *ERROR1 *ERROR1 > >>> SCRIPT2 OK OK > >>> SCRIPT3 **ABORT OK > >>> SCRIPT4 **ABORT **ABORT > >>> > >>> (*)ERROR1 means: > >>> > > -------------------------------------------------------------------------- > >>> RMaps LAMA detected oversubscription after mapping 1 of 8 processes. > >>> Since you have asked not to oversubscribe the resources the job will > > not > >>> be launched. If you would instead like to oversubscribe the resources > >>> try using the --oversubscribe option to mpirun. > >>> > > -------------------------------------------------------------------------- > >>> [node08.cluster:28849] [[50428,0],0] ORTE_ERROR_LOG: Error in file > >>> rmaps_lama_module.c at line 310 > >>> [node08.cluster:28849] [[50428,0],0] ORTE_ERROR_LOG: Error in file > >>> base/rmaps_base_map_job.c at line 166 > >>> > >>> (**)ABORT means "stuck and no answer" until forced termination. > >>> > >>> > >>> (3) openmpi-1.7.3 configuration (with PGI compiler) > >>> > >>> ./configure \ > >>> --with-tm \ > >>> --with-verbs \ > >>> --disable-ipv6 \ > >>> CC=pgcc CFLAGS="-fast -tp k8-64e" \ > >>> CXX=pgCC CXXFLAGS="-fast -tp k8-64e" \ > >>> F77=pgfortran FFLAGS="-fast -tp k8-64e" \ > >>> FC=pgfortran FCFLAGS="-fast -tp k8-64e" > >>> > >>> > >>> (4) Cluster information: > >>> > >>> 32 cores AMD based node(node03): > >>> Machine (126GB) > >>> Socket L#0 (32GB) > >>> NUMANode L#0 (P#0 16GB) + L3 L#0 (5118KB) > >>> L2 L#0 (512KB) + L1d L#0 (64KB) + L1i L#0 (64KB) + Core L#0 + PU > > L#0 > >>> (P#0) > >>> L2 L#1 (512KB) + L1d L#1 (64KB) + L1i L#1 (64KB) + Core L#1 + PU > > L#1 > >>> (P#1) > >>> L2 L#2 (512KB) + L1d L#2 (64KB) + L1i L#2 (64KB) + Core L#2 + PU > > L#2 > >>> (P#2) > >>> L2 L#3 (512KB) + L1d L#3 (64KB) + L1i L#3 (64KB) + Core L#3 + PU > > L#3 > >>> (P#3) > >>> NUMANode L#1 (P#1 16GB) + L3 L#1 (5118KB) > >>> L2 L#4 (512KB) + L1d L#4 (64KB) + L1i L#4 (64KB) + Core L#4 + PU > > L#4 > >>> (P#4) > >>> L2 L#5 (512KB) + L1d L#5 (64KB) + L1i L#5 (64KB) + Core L#5 + PU > > L#5 > >>> (P#5) > >>> L2 L#6 (512KB) + L1d L#6 (64KB) + L1i L#6 (64KB) + Core L#6 + PU > > L#6 > >>> (P#6) > >>> L2 L#7 (512KB) + L1d L#7 (64KB) + L1i L#7 (64KB) + Core L#7 + PU > > L#7 > >>> (P#7) > >>> Socket L#1 (32GB) > >>> NUMANode L#2 (P#6 16GB) + L3 L#2 (5118KB) > >>> L2 L#8 (512KB) + L1d L#8 (64KB) + L1i L#8 (64KB) + Core L#8 + PU > > L#8 > >>> (P#8) > >>> L2 L#9 (512KB) + L1d L#9 (64KB) + L1i L#9 (64KB) + Core L#9 + PU > > L#9 > >>> (P#9) > >>> L2 L#10 (512KB) + L1d L#10 (64KB) + L1i L#10 (64KB) + Core L#10 + > > PU > >>> L#10 (P#10) > >>> L2 L#11 (512KB) + L1d L#11 (64KB) + L1i L#11 (64KB) + Core L#11 + > > PU > >>> L#11 (P#11) > >>> NUMANode L#3 (P#7 16GB) + L3 L#3 (5118KB) > >>> L2 L#12 (512KB) + L1d L#12 (64KB) + L1i L#12 (64KB) + Core L#12 + > > PU > >>> L#12 (P#12) > >>> L2 L#13 (512KB) + L1d L#13 (64KB) + L1i L#13 (64KB) + Core L#13 + > > PU > >>> L#13 (P#13) > >>> L2 L#14 (512KB) + L1d L#14 (64KB) + L1i L#14 (64KB) + Core L#14 + > > PU > >>> L#14 (P#14) > >>> L2 L#15 (512KB) + L1d L#15 (64KB) + L1i L#15 (64KB) + Core L#15 + > > PU > >>> L#15 (P#15) > >>> Socket L#2 (32GB) > >>> NUMANode L#4 (P#4 16GB) + L3 L#4 (5118KB) > >>> L2 L#16 (512KB) + L1d L#16 (64KB) + L1i L#16 (64KB) + Core L#16 + > > PU > >>> L#16 (P#16) > >>> L2 L#17 (512KB) + L1d L#17 (64KB) + L1i L#17 (64KB) + Core L#17 + > > PU > >>> L#17 (P#17) > >>> L2 L#18 (512KB) + L1d L#18 (64KB) + L1i L#18 (64KB) + Core L#18 + > > PU > >>> L#18 (P#18) > >>> L2 L#19 (512KB) + L1d L#19 (64KB) + L1i L#19 (64KB) + Core L#19 + > > PU > >>> L#19 (P#19) > >>> NUMANode L#5 (P#5 16GB) + L3 L#5 (5118KB) > >>> L2 L#20 (512KB) + L1d L#20 (64KB) + L1i L#20 (64KB) + Core L#20 + > > PU > >>> L#20 (P#20) > >>> L2 L#21 (512KB) + L1d L#21 (64KB) + L1i L#21 (64KB) + Core L#21 + > > PU > >>> L#21 (P#21) > >>> L2 L#22 (512KB) + L1d L#22 (64KB) + L1i L#22 (64KB) + Core L#22 + > > PU > >>> L#22 (P#22) > >>> L2 L#23 (512KB) + L1d L#23 (64KB) + L1i L#23 (64KB) + Core L#23 + > > PU > >>> L#23 (P#23) > >>> Socket L#3 (32GB) > >>> NUMANode L#6 (P#2 16GB) + L3 L#6 (5118KB) > >>> L2 L#24 (512KB) + L1d L#24 (64KB) + L1i L#24 (64KB) + Core L#24 + > > PU > >>> L#24 (P#24) > >>> L2 L#25 (512KB) + L1d L#25 (64KB) + L1i L#25 (64KB) + Core L#25 + > > PU > >>> L#25 (P#25) > >>> L2 L#26 (512KB) + L1d L#26 (64KB) + L1i L#26 (64KB) + Core L#26 + > > PU > >>> L#26 (P#26) > >>> L2 L#27 (512KB) + L1d L#27 (64KB) + L1i L#27 (64KB) + Core L#27 + > > PU > >>> L#27 (P#27) > >>> NUMANode L#7 (P#3 16GB) + L3 L#7 (5118KB) > >>> L2 L#28 (512KB) + L1d L#28 (64KB) + L1i L#28 (64KB) + Core L#28 + > > PU > >>> L#28 (P#28) > >>> L2 L#29 (512KB) + L1d L#29 (64KB) + L1i L#29 (64KB) + Core L#29 + > > PU > >>> L#29 (P#29) > >>> L2 L#30 (512KB) + L1d L#30 (64KB) + L1i L#30 (64KB) + Core L#30 + > > PU > >>> L#30 (P#30) > >>> L2 L#31 (512KB) + L1d L#31 (64KB) + L1i L#31 (64KB) + Core L#31 + > > PU > >>> L#31 (P#31) > >>> HostBridge L#0 > >>> PCIBridge > >>> PCI 14e4:1639 > >>> Net L#0 "eth0" > >>> PCI 14e4:1639 > >>> Net L#1 "eth1" > >>> PCIBridge > >>> PCI 14e4:1639 > >>> Net L#2 "eth2" > >>> PCI 14e4:1639 > >>> Net L#3 "eth3" > >>> PCIBridge > >>> PCIBridge > >>> PCIBridge > >>> PCI 1000:0072 > >>> Block L#4 "sdb" > >>> Block L#5 "sda" > >>> PCI 1002:4390 > >>> Block L#6 "sr0" > >>> PCIBridge > >>> PCI 102b:0532 > >>> HostBridge L#7 > >>> PCIBridge > >>> PCI 15b3:6274 > >>> Net L#7 "ib0" > >>> OpenFabrics L#8 "mthca0" > >>> > >>> 8 cores AMD based node(node08): > >>> Machine (32GB) > >>> NUMANode L#0 (P#0 16GB) + Socket L#0 + L3 L#0 (6144KB) > >>> L2 L#0 (512KB) + L1d L#0 (64KB) + L1i L#0 (64KB) + Core L#0 + PU L#0 > >>> (P#0) > >>> L2 L#1 (512KB) + L1d L#1 (64KB) + L1i L#1 (64KB) + Core L#1 + PU L#1 > >>> (P#1) > >>> L2 L#2 (512KB) + L1d L#2 (64KB) + L1i L#2 (64KB) + Core L#2 + PU L#2 > >>> (P#2) > >>> L2 L#3 (512KB) + L1d L#3 (64KB) + L1i L#3 (64KB) + Core L#3 + PU L#3 > >>> (P#3) > >>> NUMANode L#1 (P#1 16GB) + Socket L#1 + L3 L#1 (6144KB) > >>> L2 L#4 (512KB) + L1d L#4 (64KB) + L1i L#4 (64KB) + Core L#4 + PU L#4 > >>> (P#4) > >>> L2 L#5 (512KB) + L1d L#5 (64KB) + L1i L#5 (64KB) + Core L#5 + PU L#5 > >>> (P#5) > >>> L2 L#6 (512KB) + L1d L#6 (64KB) + L1i L#6 (64KB) + Core L#6 + PU L#6 > >>> (P#6) > >>> L2 L#7 (512KB) + L1d L#7 (64KB) + L1i L#7 (64KB) + Core L#7 + PU L#7 > >>> (P#7) > >>> HostBridge L#0 > >>> PCI 10de:036e > >>> PCI 10de:037f > >>> Block L#0 "sda" > >>> PCI 10de:037f > >>> PCI 10de:037f > >>> PCIBridge > >>> PCI 18ca:0020 > >>> PCIBridge > >>> PCI 15b3:6274 > >>> Net L#1 "ib0" > >>> OpenFabrics L#2 "mthca0" > >>> > >>> Regards, > >>> Tetsuya Mishima > >>> > >>> _______________________________________________ > >>> users mailing list > >>> us...@open-mpi.org > >>> http://www.open-mpi.org/mailman/listinfo.cgi/users > >> > >> _______________________________________________ > >> users mailing list > >> us...@open-mpi.org > >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > > > _______________________________________________ > > users mailing list > > us...@open-mpi.org > > http://www.open-mpi.org/mailman/listinfo.cgi/users > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users