Dear Users,
I have run into a problem with openmpi-1.8.7. It configures and
installs properly but when I tested it using examples it gave me numerous
errors with mpicc as shown in the output below. Have I made an error in the
process?
Amoss-MacBook-Pro:openmpi-1.8.7 amosleff$ cd examples
Amoss-MacBook-Pro:examples amosleff$ mpicc hello_c.c -o hello_c -g
Amoss-MacBook-Pro:examples amosleff$ mpiexec hello_c
[Amoss-MacBook-Pro.local:61027] mca: base: component_find: unable to open
/usr/local/lib/openmpi/mca_ess_slurmd:
dlopen(/usr/local/lib/openmpi/mca_ess_slurmd.so, 9): Symbol not found:
_orte_jmap_t_class
Referenced from: /usr/local/lib/openmpi/mca_ess_slurmd.so
Expected in: flat namespace
in /usr/local/lib/openmpi/mca_ess_slurmd.so (ignored)
[Amoss-MacBook-Pro.local:61027] mca: base: component_find: unable to open
/usr/local/lib/openmpi/mca_errmgr_default:
dlopen(/usr/local/lib/openmpi/mca_errmgr_default.so, 9): Symbol not found:
_orte_errmgr_base_error_abort
Referenced from: /usr/local/lib/openmpi/mca_errmgr_default.so
Expected in: flat namespace
in /usr/local/lib/openmpi/mca_errmgr_default.so (ignored)
[Amoss-MacBook-Pro.local:61027] mca: base: component_find: unable to open
/usr/local/lib/openmpi/mca_routed_cm:
dlopen(/usr/local/lib/openmpi/mca_routed_cm.so, 9): Symbol not found:
_orte_message_event_t_class
Referenced from: /usr/local/lib/openmpi/mca_routed_cm.so
Expected in: flat namespace
in /usr/local/lib/openmpi/mca_routed_cm.so (ignored)
[Amoss-MacBook-Pro.local:61027] mca: base: component_find: unable to open
/usr/local/lib/openmpi/mca_routed_linear:
dlopen(/usr/local/lib/openmpi/mca_routed_linear.so, 9): Symbol not found:
_orte_message_event_t_class
Referenced from: /usr/local/lib/openmpi/mca_routed_linear.so
Expected in: flat namespace
in /usr/local/lib/openmpi/mca_routed_linear.so (ignored)
[Amoss-MacBook-Pro.local:61027] mca: base: component_find: unable to open
/usr/local/lib/openmpi/mca_grpcomm_basic:
dlopen(/usr/local/lib/openmpi/mca_grpcomm_basic.so, 9): Symbol not found:
_opal_profile
Referenced from: /usr/local/lib/openmpi/mca_grpcomm_basic.so
Expected in: flat namespace
in /usr/local/lib/openmpi/mca_grpcomm_basic.so (ignored)
[Amoss-MacBook-Pro.local:61027] mca: base: component_find: unable to open
/usr/local/lib/openmpi/mca_grpcomm_hier:
dlopen(/usr/local/lib/openmpi/mca_grpcomm_hier.so, 9): Symbol not found:
_orte_daemon_cmd_processor
Referenced from: /usr/local/lib/openmpi/mca_grpcomm_hier.so
Expected in: flat namespace
in /usr/local/lib/openmpi/mca_grpcomm_hier.so (ignored)
[Amoss-MacBook-Pro.local:61027] mca: base: component_find: unable to open
/usr/local/lib/openmpi/mca_filem_rsh:
dlopen(/usr/local/lib/openmpi/mca_filem_rsh.so, 9): Symbol not found:
_opal_uses_threads
Referenced from: /usr/local/lib/openmpi/mca_filem_rsh.so
Expected in: flat namespace
in /usr/local/lib/openmpi/mca_filem_rsh.so (ignored)
[Amoss-MacBook-Pro:61027] *** Process received signal ***
[Amoss-MacBook-Pro:61027] Signal: Segmentation fault: 11 (11)
[Amoss-MacBook-Pro:61027] Signal code: Address not mapped (1)
[Amoss-MacBook-Pro:61027] Failing at address: 0x100000013
[Amoss-MacBook-Pro:61027] [ 0] 0 libsystem_platform.dylib
0x00007fff92aebf1a _sigtramp + 26
[Amoss-MacBook-Pro:61027] [ 1] 0 ???
0x00007fff508ce0af 0x0 + 140734544797871
[Amoss-MacBook-Pro:61027] [ 2] 0 libopen-rte.7.dylib
0x000000010f386e45 orte_rmaps_base_map_job + 2789
[Amoss-MacBook-Pro:61027] [ 3] 0 libopen-pal.6.dylib
0x000000010f3ffaed opal_libevent2021_event_base_loop + 2333
[Amoss-MacBook-Pro:61027] [ 4] 0 mpiexec
0x000000010f333288 orterun + 6440
[Amoss-MacBook-Pro:61027] [ 5] 0 mpiexec
0x000000010f331942 main + 34
[Amoss-MacBook-Pro:61027] [ 6] 0 libdyld.dylib
0x00007fff94d455c9 start + 1
[Amoss-MacBook-Pro:61027] [ 7] 0 ???
0x0000000000000002 0x0 + 2
[Amoss-MacBook-Pro:61027] *** End of error message ***
Segmentation fault: 11
Your help would be much appreciated.
Amos Leffler
