Dear OpenMPI community, I faced this problem when I am installing the Rmpi:
> install.packages('Rmpi',repos='http://cran.r-project.org ',configure.args=c( + '--with-Rmpi-include=/usr/mpi/gcc/openmpi-1.8.2/include/', + '--with-Rmpi-libpath=/usr/mpi/gcc/openmpi-1.8.2/lib64/', + '--with-Rmpi-type=OPENMPI')) Installing package into ?d1/pyangac/R_lilbs? (as 滎ib?is unspecified) trying URL 'http://cran.r-project.org/src/contrib/Rmpi_0.6-6.tar.gz' Content type 'application/x-gzip' length 105181 bytes (102 Kb) opened URL ================================================== downloaded 102 Kb * installing *source* package 槔mpi?... ** package 槔mpi?successfully unpacked and MD5 sums checked checking for openpty in -lutil... no checking for main in -lpthread... no configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -I/usr/mpi/gcc/openmpi-1.8.2/include/ -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c Rmpi.c -o Rmpi.o gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -I/usr/mpi/gcc/openmpi-1.8.2/include/ -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c conversion.c -o conversion.o gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -I/usr/mpi/gcc/openmpi-1.8.2/include/ -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c internal.c -o internal.o gcc -m64 -std=gnu99 -shared -L/usr/local/lib64 -o Rmpi.so Rmpi.o conversion.o internal.o -L/usr/mpi/gcc/openmpi-1.8.2/lib64/ -lmpi -L/usr/lib64/R/lib -lR installing to /d1/pyangac/R_lilbs/Rmpi/libs ** R ** demo ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 槔mpi? finding HTML links ... done hosts html internal html mpi.abort html mpi.apply html mpi.barrier html mpi.bcast html mpi.bcast.Robj html mpi.bcast.cmd html mpi.cart.coords html mpi.cart.create html mpi.cart.get html mpi.cart.rank html mpi.cart.shift html mpi.cartdim.get html mpi.comm html mpi.comm.disconnect html mpi.comm.free html mpi.comm.inter html mpi.comm.set.errhandler html mpi.comm.spawn html mpi.const html mpi.dims.create html mpi.exit html mpi.finalize html mpi.gather html mpi.gather.Robj html mpi.get.count html mpi.get.processor.name html mpi.get.sourcetag html mpi.iapply html mpi.info html mpi.intercomm.merge html mpi.parSim html mpi.parapply html mpi.probe html mpi.realloc html mpi.reduce html mpi.remote.exec html mpi.scatter html mpi.scatter.Robj html mpi.send html mpi.send.Robj html mpi.sendrecv html mpi.setup.rng html mpi.spawn.Rslaves html mpi.universe.size html mpi.wait html ** building package indices ** testing if installed package can be loaded -------------------------------------------------------------------------- Error obtaining unique transport key from ORTE (orte_precondition_transports not present in the environment). Local host: login-0 -------------------------------------------------------------------------- [login-0.local:18260] Error: mtl_mxm.c:287 - ompi_mtl_mxm_module_init() Failed to generate jobid * DONE (Rmpi) The downloaded source packages are in ?tmp/RtmpKdDI0H/downloaded_packages? (Please forgive me about the unreadable codes, they just came out with no reason...) Before that I have set export LD_LIBRARY_PATH=/usr/mpi/gcc/openmpi-1.8.2/lib64 and export LD_PRELOAD=/usr/lib64/libutil.so Somehow the Rmpi cannot be loaded even though it has been installed successfully. Can anyone kindly give me some hint on what should be done? Thanks a lot. Pan