in this case, you should configure OpenMPI with --disable-shared --enable-static --disable-dlopen
then you can manually run the mpifort link command with --showme, so you get the fully expanded gfortran link command. then you can edit this command, and non system libs (e.g. lapack, openmpi, siesta) with -static, but system libs (e.g. m, ibverbs, ...) with -dynamic you might have to manually append -ldl, though that should not be needed Cheers, Gilles On Wednesday, September 14, 2016, Mahmood Naderan <mahmood...@gmail.com> wrote: > Well I want to omit LD_LIBRARY_PATH. For that reason I am building the > binary statically. > > > note this is not required when Open MPI is configure'd with > >--enable-mpirun-prefix-by-default > I really did that. Using Rocks-6, I installed the application and openmpi > on the shared file system (/export). > Yes it is possible to add the library paths to LD_LIBRARY_PATH, but I want > to statically put the required libraries in the binary. > > > > Regards, > Mahmood > > > > On Wed, Sep 14, 2016 at 4:44 PM, Gilles Gouaillardet < > gilles.gouaillar...@gmail.com > <javascript:_e(%7B%7D,'cvml','gilles.gouaillar...@gmail.com');>> wrote: > >> Mahmood, >> >> try to prepend /export/apps/siesta/openmpi-1.8.8/lib to your >> $LD_LIBRARY_PATH >> >> note this is not required when Open MPI is configure'd with >> --enable-mpirun-prefix-by-default >> >> >> Cheers, >> >> Gilles >> >> On Wednesday, September 14, 2016, Mahmood Naderan <mahmood...@gmail.com >> <javascript:_e(%7B%7D,'cvml','mahmood...@gmail.com');>> wrote: >> >>> Hi, >>> Here is the problem with statically linking an application with a >>> program. >>> >>> by specifying the library names: >>> >>> FC=/export/apps/siesta/openmpi-1.8.8/bin/mpifort >>> FFLAGS=-g -Os >>> FPPFLAGS= -DMPI -DFC_HAVE_FLUSH -DFC_HAVE_ABORT >>> LDFLAGS=-static >>> MPI1=/export/apps/siesta/openmpi-1.8.8/lib/libmpi_mpifh.a >>> MPI2=/export/apps/siesta/openmpi-1.8.8/lib/libmpi_usempi.a >>> BLAS_LIBS=../libopenblas.a >>> SCALAPACK_LIBS=../libscalapack.a >>> LIBS=$(SCALAPACK_LIBS) $(BLAS_LIBS) $(MPI1) $(MPI2) >>> >>> >>> >>> >>> The output of "make" is: >>> >>> /export/apps/siesta/openmpi-1.8.8/bin/mpifort -o transiesta \ >>> -static automatic_cell.o ...<OMITTED LIB NAMES>..... >>> libmpi_f90.a >>> `FoX/FoX-config --libs --wcml` ../libscalapack.a >>> ../libopenblas.a /export/apps/siesta/openmpi-1.8.8/lib/libmpi_mpifh.a >>> /export/apps/siesta/openmpi-1.8.8/lib/libmpi_usempi.a >>> /export/apps/siesta/openmpi-1.8.8/lib/libopen-pal.a(dl_dlopen_module.o): >>> In function `dlopen_open': >>> dl_dlopen_module.c:(.text+0x473): warning: Using 'dlopen' in statically >>> linked applications requires at runtime the shared libraries from the glibc >>> version used for linking >>> /usr/bin/ld: cannot find -libverbs >>> collect2: ld returned 1 exit status >>> >>> >>> >>> >>> If I drop -static, the error is gone... However, ldd command shoes that >>> binary can not access those two MPI libraries. >>> >>> >>> Regards, >>> Mahmood >>> >>> >>> >> _______________________________________________ >> users mailing list >> users@lists.open-mpi.org >> <javascript:_e(%7B%7D,'cvml','users@lists.open-mpi.org');> >> https://rfd.newmexicoconsortium.org/mailman/listinfo/users >> > >
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