I apologize. I did not realize that I did not reply to the list.
Going with the view this is a PGI problem, I noticed they recently
released version 18.10. I had just installed 18.7 within the last couple
weeks.
The problem is resolved in 18.10.
-Ray Muno
On 11/27/18 7:55 PM, Gilles Gouaillardet wrote:
Folks,
sorry for the late follow-up. The config.log was indeed sent offline.
Here is the relevant part :
configure:294375: checking for required lustre data structures
configure:294394: pgcc -O -DNDEBUG -Iyes/include -c conftest.c
PGC-S-0040-Illegal use of symbol, u_int64_t (/usr/include/sys/quota.h:
157)
PGC-W-0156-Type not specified, 'int' assumed
(/usr/include/sys/quota.h: 157)
PGC-S-0040-Illegal use of symbol, u_int64_t (/usr/include/sys/quota.h:
158)
PGC-W-0156-Type not specified, 'int' assumed
(/usr/include/sys/quota.h: 158)
PGC-S-0040-Illegal use of symbol, u_int64_t (/usr/include/sys/quota.h:
159)
PGC-W-0156-Type not specified, 'int' assumed
(/usr/include/sys/quota.h: 159)
PGC-S-0040-Illegal use of symbol, u_int64_t (/usr/include/sys/quota.h:
160)
PGC-W-0156-Type not specified, 'int' assumed
(/usr/include/sys/quota.h: 160)
PGC-S-0040-Illegal use of symbol, u_int64_t (/usr/include/sys/quota.h:
161)
PGC-W-0156-Type not specified, 'int' assumed
(/usr/include/sys/quota.h: 161)
PGC-S-0040-Illegal use of symbol, u_int64_t (/usr/include/sys/quota.h:
162)
PGC-W-0156-Type not specified, 'int' assumed
(/usr/include/sys/quota.h: 162)
PGC-S-0040-Illegal use of symbol, u_int64_t (/usr/include/sys/quota.h:
163)
PGC-W-0156-Type not specified, 'int' assumed
(/usr/include/sys/quota.h: 163)
PGC-S-0040-Illegal use of symbol, u_int64_t (/usr/include/sys/quota.h:
164)
PGC-W-0156-Type not specified, 'int' assumed
(/usr/include/sys/quota.h: 164)
PGC-S-0040-Illegal use of symbol, u_int64_t (/usr/include/sys/quota.h:
211)
PGC-W-0156-Type not specified, 'int' assumed
(/usr/include/sys/quota.h: 211)
PGC-S-0040-Illegal use of symbol, u_int64_t (/usr/include/sys/quota.h:
212)
PGC-W-0156-Type not specified, 'int' assumed
(/usr/include/sys/quota.h: 212)
PGC/x86-64 Linux 18.7-0: compilation completed with severe errors
configure:294401: $? = 2
configure:294415: result: no
configure:294424: error: Lustre support requested but not found. Aborting
Here is the conftest.c that triggers the error
#include "lustre/lustreapi.h"
void alloc_lum()
{
int v1, v3;
v1 = sizeof(struct lov_user_md_v1) +
LOV_MAX_STRIPE_COUNT * sizeof(struct lov_user_ost_data_v1);
v3 = sizeof(struct lov_user_md_v3) +
LOV_MAX_STRIPE_COUNT * sizeof(struct lov_user_ost_data_v1);
}
The same code was reported to work with gcc compiler, so at that
stage, this looks like
a PGI or an environment issue (sometimes the sysadmin has to re-run
makelocalrc if some dependencies have changed),
so I recommend this error is submitted to PGI support.
I reviewed the code and filled a PR that get rids of the
"-Iyes/include" flag.
Merged or not, that does not fix the real issue here.
Cheers,
Gilles
On 11/28/2018 6:04 AM, Gabriel, Edgar wrote:
Gilles submitted a patch for that, and I approved it a couple of days
back, I *think* it has not been merged however. This was a bug in the
Open MPI Lustre configure logic, should be fixed after this one however.
https://github.com/open-mpi/ompi/pull/6080
Thanks
Edgar
-----Original Message-----
From: users [mailto:users-boun...@lists.open-mpi.org] On Behalf Of
Latham,
Robert J. via users
Sent: Tuesday, November 27, 2018 2:03 PM
To: users@lists.open-mpi.org
Cc: Latham, Robert J. <r...@mcs.anl.gov>; gi...@rist.or.jp
Subject: Re: [OMPI users] Building OpenMPI with Lustre support using
PGI fails
On Tue, 2018-11-13 at 21:57 -0600, gil...@rist.or.jp wrote:
Raymond,
can you please compress and post your config.log ?
I didn't see the config.log in response to this. Maybe Ray and
Giles took the
discusison off list? As someone who might have introduced the
offending
configure-time checks, I'm particularly interested in fixing lustre
detection.
==rob
Cheers,
Gilles
----- Original Message -----
I am trying to build OpenMPI with Lustre support using PGI 18.7 on
CentOS 7.5 (1804).
It builds successfully with Intel compilers, but fails to find the
necessary Lustre components with the PGI compiler.
I have tried building OpenMPI 4.0.0, 3.1.3 and 2.1.5. I can
build
OpenMPI, but configure does not find the proper Lustre files.
Lustre is installed from current client RPMS, version 2.10.5
Include files are in /usr/include/lustre
When specifying --with-lustre, I get:
--- MCA component fs:lustre (m4 configuration macro) checking for
MCA component fs:lustre compile mode... dso checking --with-lustre
value... simple ok (unspecified value) looking for header without
includes checking lustre/lustreapi.h usability... yes checking
lustre/lustreapi.h presence... yes checking for
lustre/lustreapi.h... yes checking for library containing
llapi_file_create... -llustreapi checking if liblustreapi requires
libnl v1 or v3...
checking for required lustre data structures... no
configure: error: Lustre support requested but not found. Aborting
--
Ray Muno
IT Manager
University of Minnesota
Aerospace Engineering and Mechanics Mechanical
Engineering
110 Union St. S.E. 111 Church Street SE
Minneapolis, MN 55455 Minneapolis, MN 55455
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--
Ray Muno
IT Manager
e-mail: m...@aem.umn.edu
Phone: (612) 625-9531
University of Minnesota
Aerospace Engineering and Mechanics Mechanical Engineering
110 Union St. S.E. 111 Church Street SE
Minneapolis, MN 55455 Minneapolis, MN 55455
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