I verified that it makes it through to a bash prompt, but I’m a little less confident that something make test does doesn’t clear it. Any recommendation for a way to verify?
In any case, no change, unfortunately. Sent from my iPhone > On Feb 16, 2019, at 08:13, Gabriel, Edgar <egabr...@central.uh.edu> wrote: > > What file system are you running on? > > I will look into this, but it might be later next week. I just wanted to > emphasize that we are regularly running the parallel hdf5 tests with ompio, > and I am not aware of any outstanding items that do not work (and are > supposed to work). That being said, I run the tests manually, and not the > 'make test' commands. Will have to check which tests are being run by that. > > Edgar > >> -----Original Message----- >> From: users [mailto:users-boun...@lists.open-mpi.org] On Behalf Of Gilles >> Gouaillardet >> Sent: Saturday, February 16, 2019 1:49 AM >> To: Open MPI Users <users@lists.open-mpi.org> >> Subject: Re: [OMPI users] HDF5 1.10.4 "make check" problems w/OpenMPI >> 3.1.3 >> >> Ryan, >> >> Can you >> >> export OMPI_MCA_io=^ompio >> >> and try again after you made sure this environment variable is passed by srun >> to the MPI tasks ? >> >> We have identified and fixed several issues specific to the (default) ompio >> component, so that could be a valid workaround until the next release. >> >> Cheers, >> >> Gilles >> >> Ryan Novosielski <novos...@rutgers.edu> wrote: >>> Hi there, >>> >>> Honestly don’t know which piece of this puzzle to look at or how to get more >> information for troubleshooting. I successfully built HDF5 1.10.4 with RHEL >> system GCC 4.8.5 and OpenMPI 3.1.3. Running the “make check” in HDF5 is >> failing at the below point; I am using a value of RUNPARALLEL='srun -- >> mpi=pmi2 -p main -t 1:00:00 -n6 -N1’ and have a SLURM that’s otherwise >> properly configured. >>> >>> Thanks for any help you can provide. >>> >>> make[4]: Entering directory >>> `/scratch/novosirj/install-files/hdf5-1.10.4-build- >> gcc-4.8-openmpi-3.1.3/testpar' >>> ============================ >>> Testing t_mpi >>> ============================ >>> t_mpi Test Log >>> ============================ >>> srun: job 84126610 queued and waiting for resources >>> srun: job 84126610 has been allocated resources >>> srun: error: slepner023: tasks 0-5: Alarm clock 0.01user 0.00system >>> 20:03.95elapsed 0%CPU (0avgtext+0avgdata 5152maxresident)k >>> 0inputs+0outputs (0major+1529minor)pagefaults 0swaps >>> make[4]: *** [t_mpi.chkexe_] Error 1 >>> make[4]: Leaving directory >>> `/scratch/novosirj/install-files/hdf5-1.10.4-build- >> gcc-4.8-openmpi-3.1.3/testpar' >>> make[3]: *** [build-check-p] Error 1 >>> make[3]: Leaving directory >>> `/scratch/novosirj/install-files/hdf5-1.10.4-build- >> gcc-4.8-openmpi-3.1.3/testpar' >>> make[2]: *** [test] Error 2 >>> make[2]: Leaving directory >>> `/scratch/novosirj/install-files/hdf5-1.10.4-build- >> gcc-4.8-openmpi-3.1.3/testpar' >>> make[1]: *** [check-am] Error 2 >>> make[1]: Leaving directory >>> `/scratch/novosirj/install-files/hdf5-1.10.4-build- >> gcc-4.8-openmpi-3.1.3/testpar' >>> make: *** [check-recursive] Error 1 >>> >>> -- >>> ____ >>> || \\UTGERS, >>> |---------------------------*O*--------------------------- >>> ||_// the State | Ryan Novosielski - novos...@rutgers.edu >>> || \\ University | Sr. Technologist - 973/972.0922 (2x0922) ~*~ RBHS Campus >>> || \\ of NJ | Office of Advanced Research Computing - MSB C630, >>> Newark >>> `' >> _______________________________________________ >> users mailing list >> users@lists.open-mpi.org >> https://lists.open-mpi.org/mailman/listinfo/users > _______________________________________________ > users mailing list > users@lists.open-mpi.org > https://lists.open-mpi.org/mailman/listinfo/users _______________________________________________ users mailing list users@lists.open-mpi.org https://lists.open-mpi.org/mailman/listinfo/users
