FWIW, the error message is telling you exactly what is wrong and provides a link to the FAQ item on how to fix it.
It's a bit inelegant that it's segv'ing after that, but the real issue is what is described in the help message. > On Mar 6, 2019, at 3:07 PM, Zhifeng Yang <yangz...@gmail.com> wrote: > > Hi > > I compiled openmpi-3.1.2 using pgi 18.10 on our IBM power9 machine. After > that, I used openmpi-3.1.2 to compile parallel-netcdf-1.8.1. However, I got > the following error. > > ./nc_test -c -d . > [c699login01:12104] mca_base_component_repository_open: unable to open > mca_plm_lsf: libbat.so: cannot open shared object file: No such file or > directory (ignored) > [c699login01:12104] mca_base_component_repository_open: unable to open > mca_ras_lsf: libbat.so: cannot open shared object file: No such file or > directory (ignored) > -------------------------------------------------------------------------- > WARNING: There are more than one active ports on host 'c699login01', but the > default subnet GID prefix was detected on more than one of these > ports. If these ports are connected to different physical IB > networks, this configuration will fail in Open MPI. This version of > Open MPI requires that every physically separate IB subnet that is > used between connected MPI processes must have different subnet ID > values. > > Please see this FAQ entry for more details: > > http://www.open-mpi.org/faq/?category=openfabrics#ofa-default-subnet-gid > > NOTE: You can turn off this warning by setting the MCA parameter > btl_openib_warn_default_gid_prefix to 0. > -------------------------------------------------------------------------- > [c699login01:12103] *** Process received signal *** > [c699login01:12103] Signal: Segmentation fault (11) > [c699login01:12103] Signal code: (3) > [c699login01:12103] Failing at address: 0x615f6c61706f0064 > [c699login01:12103] [ 0] [0x2000000504d8] > [c699login01:12103] [ 1] [0x34333164] > [c699login01:12103] [ 2] /lib64/libc.so.6(__sbrk+0x98)[0x200000729b28] > [c699login01:12103] [ 3] > /lib64/libc.so.6(__default_morecore+0x18)[0x2000006aece8] > [c699login01:12103] [ 4] /lib64/libc.so.6(+0x9511c)[0x2000006a511c] > [c699login01:12103] [ 5] /lib64/libc.so.6(+0x96ff4)[0x2000006a6ff4] > [c699login01:12103] [ 6] /lib64/libc.so.6(__libc_malloc+0x8c)[0x2000006a938c] > [c699login01:12103] [ 7] > /home/vy57456/application/pgi/18.10/openmpi-3.1.2/lib/libopen-pal.so.40(opal_show_help_yylex+0x98)[0x20000099a8e0] > [c699login01:12103] [ 8] > /home/vy57456/application/pgi/18.10/openmpi-3.1.2/lib/libopen-pal.so.40(opal_show_help_vstring+0x25c)[0x20000099a2f4] > [c699login01:12103] [ 9] > /home/vy57456/application/pgi/18.10/openmpi-3.1.2/lib/libopen-rte.so.40(orte_show_help+0x70)[0x200000838f48] > [c699login01:12103] [10] > /home/vy57456/application/pgi/18.10/openmpi-3.1.2/lib/openmpi/mca_btl_openib.so(+0x160d4)[0x2000036060d4] > > For detail about error, please see the attached file. > > Best, > Zhifeng > > <make_check.log>_______________________________________________ > users mailing list > users@lists.open-mpi.org > https://lists.open-mpi.org/mailman/listinfo/users -- Jeff Squyres jsquy...@cisco.com _______________________________________________ users mailing list users@lists.open-mpi.org https://lists.open-mpi.org/mailman/listinfo/users
