Hi, Am 12.01.2020 um 07:15 schrieb Lane, William via users:
> I'm having problems w/an old openMPI test program which I re-compiled using > OpenMPI 1.8.7 for CentOS 6.3 running Univa Grid Engine 8.6.4. IIRC at that time it was necessary to compile Open MPI explicitly with --with-sge. Any newer version of Open MPI wouldn't work for you, where it detects UGE automatically? > • Are the special PE requirements for Son of Grid Engine needed for > Univa Grid Engine 8.6.4 (in particular qsort_args and/or control_slaves both > being present and set to TRUE) Yes, as "control_slaves" allows `qrsh -inherit …` only when it's set. > • is LD_LIBRARY_PATH required to be set for openMPI 1.8.7 to run > (Univa Grid Engine specifically reports that it has: "removed environment > variable LD_LIBRARY_PATH from submit environment - it is considered a > security issue" when I run my test openMPI 1.8.7 job. I usually don't like `qsub -V …` at all (which I think you are using), as a changed interactive environment might break the job at a later point in time and it's hard to investigate. I prefer setting all necessary environment variable inside the job script itself, so that it is self contained. Maybe they judge it a security issue, as this variable would also be present in case you run a queue prolog/epilog as a different user. For the plain job itself it wouldn't matter IMO. And for any further investigation: which problem do you face in detail? -- Reuti
