Could you change the –with-pmi to be --with-pmi=/cm/shared/apps/slurm21.08.8
? From: "Jeffrey D. (JD) Tamucci" <jeffrey.tamu...@uconn.edu> Date: Tuesday, October 4, 2022 at 10:40 AM To: "Pritchard Jr., Howard" <howa...@lanl.gov>, "bbarr...@amazon.com" <bbarr...@amazon.com> Cc: Open MPI Users <users@lists.open-mpi.org> Subject: Re: [EXTERNAL] [OMPI users] Beginner Troubleshooting OpenMPI Installation - pmi.h Error Hi Howard and Brian, Of course. Here's a dropbox link to the full folder: https://www.dropbox.com/s/raqlcnpgk9wz78b/ompi-output_Sep30_2022.tar.bz2?dl=0<https://urldefense.com/v3/__https:/www.dropbox.com/s/raqlcnpgk9wz78b/ompi-output_Sep30_2022.tar.bz2?dl=0__;!!Bt8fGhp8LhKGRg!Gbf2ik51d_yyLNSd0MxiRpzUUleMIUbnc_K_GZiX3bNyn_5hxYeebIpaGygYEZebCOMxxbVZugqOTreswGqTKVLD8RFMow$> This was the configure and make commands: ./configure \ --prefix=/shared/maylab/mayapps/mpi/openmpi/4.1.4 \ --with-slurm \ --with-lsf=no \ --with-pmi=/cm/shared/apps/slurm/21.08.8/include/slurm \ --with-pmi-libdir=/cm/shared/apps/slurm/21.08.8/lib64 \ --with-hwloc=/cm/shared/apps/hwloc/1.11.11 \ --with-cuda=/gpfs/sharedfs1/admin/hpc2.0/apps/cuda/11.6 \ --enable-shared \ --enable-static && make -j 32 && make -j 32 check make install The output of the make command is in the install_open-mpi_4.1.4_hpc2.log file. Jeffrey D. (JD) Tamucci University of Connecticut Molecular & Cell Biology RA in Lab of Eric R. May PhD / MPH Candidate he/him On Tue, Oct 4, 2022 at 12:33 PM Pritchard Jr., Howard <howa...@lanl.gov<mailto:howa...@lanl.gov>> wrote: *Message sent from a system outside of UConn.* HI JD, Could you post the configure options your script uses to build Open MPI? Howard From: users <users-boun...@lists.open-mpi.org<mailto:users-boun...@lists.open-mpi.org>> on behalf of "Jeffrey D. (JD) Tamucci via users" <users@lists.open-mpi.org<mailto:users@lists.open-mpi.org>> Reply-To: Open MPI Users <users@lists.open-mpi.org<mailto:users@lists.open-mpi.org>> Date: Tuesday, October 4, 2022 at 10:07 AM To: "users@lists.open-mpi.org<mailto:users@lists.open-mpi.org>" <users@lists.open-mpi.org<mailto:users@lists.open-mpi.org>> Cc: "Jeffrey D. (JD) Tamucci" <jeffrey.tamu...@uconn.edu<mailto:jeffrey.tamu...@uconn.edu>> Subject: [EXTERNAL] [OMPI users] Beginner Troubleshooting OpenMPI Installation - pmi.h Error Hi, I have been trying to install OpenMPI v4.1.4 on a university HPC cluster. We use the Bright cluster manager and have SLURM v21.08.8 and RHEL 8.6. I used a script to install OpenMPI that a former co-worker had used to successfully install OpenMPI v3.0.0 previously. I updated it to include new versions of the dependencies and new paths to those installs. Each time, it fails in the make install step. There is a fatal error about finding pmi.h. It specifically says: make[2]: Entering directory '/shared/maylab/src/openmpi-4.1.4/opal/mca/pmix/s1' CC libmca_pmix_s1_la-pmix_s1_component.lo CC libmca_pmix_s1_la-pmix_s1.lo pmix_s1.c:29:10: fatal error: pmi.h: No such file or directory 29 | #include <pmi.h> I've looked through the archives and seen others face similar errors in years past but I couldn't understand the solutions. One person suggested that SLURM may be missing PMI libraries. I think I've verified that SLURM has PMI. I include paths to those files and it seems to find them earlier in the process. I'm not sure what the next step is in troubleshooting this. I have included a bz2 file containing my install script, a log file containing the script output (from build, make, make install), the config.log, and the opal_config.h file. If anyone could provide any guidance, I'd sincerely appreciate it. Best, JD
