This is what I found after a quick google search: https://lists.sdsc.edu/pipermail/npaci-rocks-discussion/2011-February/051353.html Not sure it is relevant to your case, though
P. On Thu, 2013-05-23 at 18:30 +0200, Goranka Bilalbegovic wrote: > Intel compilers at the cluster I am using recently have been replaced > with gfortran/gcc. I compiled espresso-5.0.2 an did not notice > anything unusual at the configure and compilation steps. However, > while running pw jobs (my own and examples) I found that *.err files > (from sge scripts) are not empty: > > > [0] 16 at [0x00000000022d4628], grouputil.c[75] > [0] 8 at [0x00000000022d4578], local_proc.c[91] > [0] 8 at [0x00000000022d44c8], local_proc.c[90] > [0] 32 at [0x00000000022d43f8], mpid_vc.c[93] > [0] 16 at [0x00000000022d4338], grouputil.c[75] > [0] 8 at [0x00000000022d4288], local_proc.c[91] > [0] 8 at [0x00000000022d41d8], local_proc.c[90] > [0] 32 at [0x00000000022d4108], mpid_vc.c[93] > [0] 16 at [0x00000000022d4048], grouputil.c[75] > [0] 8 at [0x00000000022d3f98], local_proc.c[91] > [0] 8 at [0x00000000022d3ee8], local_proc.c[90] > [0] 32 at [0x00000000022d3e18], mpid_vc.c[93] > [0] 16 at [0x00000000022d3d58], grouputil.c[75] > [0] 8 at [0x00000000022d3ca8], local_proc.c[91] > [0] 8 at [0x00000000022d3bf8], local_proc.c[90] > [0] 32 at [0x00000000022d3a78], mpid_vc.c[93] > ... (more lines) > > > The compiler version is: > > > mpicc for MVAPICH2 version 1.8a2 > Using built-in specs. > Target: x86_64-redhat-linux > Configured with: ../configure --prefix=/usr --mandir=/usr/share/man > --infodir=/usr/share/info > --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap > --enable-shared > --enable-threads=posix --enable-checking=release --with-system-zlib > --enable-__cxa_atexit > --disable-libunwind-exceptions --enable-gnu-unique-object > --enable-languages=c,c++,objc,obj-c++,java,fortran,ada > --enable-java-awt=gtk > --disable-dssi > --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre > --enable-libgcj-multifile --enable-java-maintainer-mode > --with-ecj-jar=/usr/share/java/eclipse-ecj.jar > --disable-libjava-multilib > --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 > --build=x86_64-redhat-linux > Thread model: posix > gcc version 4.4.6 20120305 (Red Hat 4.4.6-4) (GCC) > > > > > The results from examples are OK, but I would like to know why lines > like this appear. Is it dangerous ? > Thank you very much for your answer. > Best regards, > -- > Goranka Bilalbegovic > Department of Physics, Faculty of Science, > University of Zagreb, Croatia > _______________________________________________ > Pw_forum mailing list > Pw_forum at pwscf.org > http://pwscf.org/mailman/listinfo/pw_forum -- Paolo Giannozzi, Dept. Chemistry&Physics&Environment, Univ. Udine, via delle Scienze 208, 33100 Udine, Italy Phone +39-0432-558216, fax +39-0432-558222
