Strange...
In this case I got the same result as you on Xubuntu and openSUSE:
[ xUbuntu 14.04.1 - 32bit / Scilab 5.5.0 / LANG=sl_SI.UTF-8 ]
lebevc@book-PC:~$ printf "%0.2f\n" 3.1416
bash: printf: 3.1416: neveljavno število
0,00
lebevc@book-PC:~$ printf "%0.2f\n" 3,1416
3,14
----------------------------------------------------------------------
[ openSUSE 13.1-64bit ; Scilab 5.4.1]
lebevc@linux-xkf0:~> printf "%0.2f\n" 3.1416
bash: printf: 3.1416: invalid number
0,00
lebevc@linux-xkf0:~> printf "%0.2f\n" 3,1416
3,14
-->x = 0.6231166;
-->xstr = msprintf("%0.2f", x)
xstr =
0.62
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