They will be present in classpath if you won't exclude them.
I'm not familiar with Netbeans, but in Eclipse Sysdeo Plugin I have to
manually remove them,
so you should check your runtime classpath.

You can also try to build a war and look at WEB-INF/lib folder to check if
these files not there.

On Mon, Apr 29, 2013 at 10:25 PM, George Christman
<gchrist...@cardaddy.com>wrote:

> I was wondering the same thing about those files, but as you said they
> shouldn't.
>
>
> On Mon, Apr 29, 2013 at 2:23 PM, George Christman
> <gchrist...@cardaddy.com>wrote:
>
> > I run my project from Netbeans, locally with jetty, and deployed as a
> war.
> >
> >
> > On Mon, Apr 29, 2013 at 2:21 PM, Dmitry Gusev <dmitry.gu...@gmail.com
> >wrote:
> >
> >> How do you run your project? Is it from within eclipse? Or you're
> >> deploying
> >> a *.war file?
> >>
> >> Could it be that these files getting into classpath?
> >>
> >> [INFO] +- org.apache.tapestry:tapestry-test:jar:5.3.6:compile
> >> ...
> >> [INFO] |  +- org.apache.tomcat:dbcp:jar:6.0.30:compile
> >> [INFO] |  +- org.apache.tomcat:coyote:jar:6.0.30:compile
> >> [INFO] |  |  +- org.apache.tomcat:servlet-api:jar:6.0.30:compile
> >> [INFO] |  |  \- org.apache.tomcat:juli:jar:6.0.30:compile
> >> [INFO] |  \- org.apache.tomcat:catalina:jar:6.0.30:compile
> >> [INFO] |     \- org.apache.tomcat:annotations-api:jar:6.0.30:compile
> >>
> >> They shouldn't, as well as any transitive dependencies
> >> of org.apache.tapestry:tapestry-test
> >>
> >>
> >> On Mon, Apr 29, 2013 at 10:10 PM, George Christman
> >> <gchrist...@cardaddy.com>wrote:
> >>
> >> > Here's my mvn dependency tree, thanks for your help.
> >> >
> >> > [WARNING] Failed to retrieve plugin descriptor for
> >> > org.codehaus.mojo:hibernate3-
> >> > maven-plugin:2.2: Failed to parse plugin descriptor for
> >> > org.codehaus.mojo:hibern
> >> > ate3-maven-plugin:2.2
> >> > (C:\Users\gmc07\.m2\repository\org\codehaus\mojo\hibernate
> >> > 3-maven-plugin\2.2\hibernate3-maven-plugin-2.2.jar): error in opening
> >> zip
> >> > file
> >> > [INFO]
> >> > [INFO] --- maven-dependency-plugin:2.1:tree (default-cli) @
> RoleManager
> >> ---
> >> > [INFO] com.mycompany:RoleManager:war:1.0-SNAPSHOT
> >> > [INFO] +- org.apache.tapestry:tapestry-core:jar:5.3.6:compile
> >> > [INFO] |  +- org.apache.tapestry:tapestry-json:jar:5.3.6:compile
> >> > [INFO] |  +- org.antlr:antlr-runtime:jar:3.3:compile
> >> > [INFO] |  |  \- org.antlr:stringtemplate:jar:3.2.1:compile
> >> > [INFO] |  +- org.apache.tapestry:tapestry-ioc:jar:5.3.6:compile
> >> > [INFO] |  |  +-
> >> org.apache.tapestry:tapestry5-annotations:jar:5.3.6:compile
> >> > [INFO] |  |  +- org.apache.tapestry:tapestry-func:jar:5.3.6:compile
> >> > [INFO] |  |  +- org.slf4j:slf4j-log4j12:jar:1.6.1:compile
> >> > [INFO] |  |  +- javax.inject:javax.inject:jar:1:compile
> >> > [INFO] |  |  +- org.apache.tapestry:plastic:jar:5.3.6:compile
> >> > [INFO] |  |  +- log4j:log4j:jar:1.2.14:compile
> >> > [INFO] |  |  \- javassist:javassist:jar:3.12.1.GA:compile
> >> > [INFO] |  \- commons-codec:commons-codec:jar:1.5:compile
> >> > [INFO] +- org.apache.tapestry:tapestry-test:jar:5.3.6:compile
> >> > [INFO] |  +-
> org.seleniumhq.selenium:selenium-server:jar:2.14.0:compile
> >> > [INFO] |  |  +- bouncycastle:bcprov-jdk15:jar:135:compile
> >> > [INFO] |  |  +- mx4j:mx4j-tools:jar:3.0.1:compile
> >> > [INFO] |  |  +- org.mortbay.jetty:servlet-api-2.5:jar:6.1.9:compile
> >> > [INFO] |  |  +- net.jcip:jcip-annotations:jar:1.0:compile
> >> > [INFO] |  |  \- org.yaml:snakeyaml:jar:1.8:compile
> >> > [INFO] |  +- org.eclipse.jetty:jetty-plus:jar:7.0.0.v20091005:compile
> >> > [INFO] |  |  \-
> >> > org.apache.geronimo.specs:geronimo-jta_1.1_spec:jar:1.1.1:compil
> >> > e
> >> > [INFO] |  +- org.seleniumhq.selenium:selenium-java:jar:2.14.0:compile
> >> > [INFO] |  |  +-
> >> > org.seleniumhq.selenium:selenium-android-driver:jar:2.14.0:compi
> >> > le
> >> > [INFO] |  |  |  \-
> >> > org.seleniumhq.selenium:selenium-remote-driver:jar:2.14.0:com
> >> > pile
> >> > [INFO] |  |  |     +- org.json:json:jar:20080701:compile
> >> > [INFO] |  |  |     \- com.google.guava:guava:jar:10.0.1:compile
> >> > [INFO] |  |  |        \-
> >> com.google.code.findbugs:jsr305:jar:1.3.9:compile
> >> > [INFO] |  |  +-
> >> > org.seleniumhq.selenium:selenium-chrome-driver:jar:2.14.0:compil
> >> > e
> >> > [INFO] |  |  +-
> >> > org.seleniumhq.selenium:selenium-htmlunit-driver:jar:2.14.0:comp
> >> > ile
> >> > [INFO] |  |  |  +-
> >> org.seleniumhq.selenium:selenium-api:jar:2.14.0:compile
> >> > [INFO] |  |  |  +- net.sourceforge.htmlunit:htmlunit:jar:2.9:compile
> >> > [INFO] |  |  |  |  +- xalan:xalan:jar:2.7.1:compile
> >> > [INFO] |  |  |  |  |  \- xalan:serializer:jar:2.7.1:compile
> >> > [INFO] |  |  |  |  +-
> >> org.apache.httpcomponents:httpmime:jar:4.1.2:compile
> >> > [INFO] |  |  |  |  +-
> >> > net.sourceforge.htmlunit:htmlunit-core-js:jar:2.9:compile
> >> > [INFO] |  |  |  |  +- xerces:xercesImpl:jar:2.9.1:compile
> >> > [INFO] |  |  |  |  |  \- xml-apis:xml-apis:jar:1.3.04:compile
> >> > [INFO] |  |  |  |  +-
> >> net.sourceforge.nekohtml:nekohtml:jar:1.9.15:compile
> >> > [INFO] |  |  |  |  \-
> >> net.sourceforge.cssparser:cssparser:jar:0.9.5:compile
> >> > [INFO] |  |  |  |     \- org.w3c.css:sac:jar:1.3:compile
> >> > [INFO] |  |  |  \-
> >> org.apache.httpcomponents:httpclient:jar:4.1.2:compile
> >> > [INFO] |  |  |     \-
> >> org.apache.httpcomponents:httpcore:jar:4.1.2:compile
> >> > [INFO] |  |  +-
> >> > org.seleniumhq.selenium:selenium-firefox-driver:jar:2.14.0:compi
> >> > le
> >> > [INFO] |  |  |  \- org.apache.commons:commons-exec:jar:1.1:compile
> >> > [INFO] |  |  +-
> >> > org.seleniumhq.selenium:selenium-ie-driver:jar:2.14.0:compile
> >> > [INFO] |  |  |  \- net.java.dev.jna:jna:jar:3.3.0:compile
> >> > [INFO] |  |  +-
> >> > org.seleniumhq.selenium:selenium-iphone-driver:jar:2.14.0:compil
> >> > e
> >> > [INFO] |  |  \-
> >> org.seleniumhq.selenium:selenium-support:jar:2.14.0:compile
> >> > [INFO] |  +- org.testng:testng:jar:5.14.10:compile
> >> > [INFO] |  |  +- org.beanshell:bsh:jar:2.0b4:compile
> >> > [INFO] |  |  \- com.beust:jcommander:jar:1.12:compile
> >> > [INFO] |  +-
> org.eclipse.jetty:jetty-webapp:jar:7.0.0.v20091005:compile
> >> > [INFO] |  |  +-
> org.eclipse.jetty:jetty-xml:jar:7.0.0.v20091005:compile
> >> > [INFO] |  |  |  \-
> >> org.eclipse.jetty:jetty-util:jar:7.0.0.v20091005:compile
> >> > [INFO] |  |  \-
> >> org.eclipse.jetty:jetty-servlet:jar:7.0.0.v20091005:compile
> >> > [INFO] |  |     \-
> >> > org.eclipse.jetty:jetty-security:jar:7.0.0.v20091005:compile
> >> > [INFO] |  +- jetty:org.mortbay.jetty:jar:5.1.12:compile
> >> > [INFO] |  +- org.eclipse.jetty:jetty-jndi:jar:7.0.0.v20091005:compile
> >> > [INFO] |  |  \- javax.mail:mail:jar:1.4:compile
> >> > [INFO] |  +- org.easymock:easymock:jar:3.0:compile
> >> > [INFO] |  |  +- cglib:cglib-nodep:jar:2.2:compile
> >> > [INFO] |  |  \- org.objenesis:objenesis:jar:1.2:compile
> >> > [INFO] |  +-
> org.eclipse.jetty:jetty-server:jar:7.0.0.v20091005:compile
> >> > [INFO] |  |  +-
> >> > org.eclipse.jetty:jetty-continuation:jar:7.0.0.v20091005:compile
> >> >
> >> > [INFO] |  |  \-
> org.eclipse.jetty:jetty-http:jar:7.0.0.v20091005:compile
> >> > [INFO] |  |     \-
> >> org.eclipse.jetty:jetty-io:jar:7.0.0.v20091005:compile
> >> > [INFO] |  +- org.apache.tomcat:dbcp:jar:6.0.30:compile
> >> > [INFO] |  +- org.apache.tomcat:coyote:jar:6.0.30:compile
> >> > [INFO] |  |  +- org.apache.tomcat:servlet-api:jar:6.0.30:compile
> >> > [INFO] |  |  \- org.apache.tomcat:juli:jar:6.0.30:compile
> >> > [INFO] |  \- org.apache.tomcat:catalina:jar:6.0.30:compile
> >> > [INFO] |     \- org.apache.tomcat:annotations-api:jar:6.0.30:compile
> >> > [INFO] +- org.apache.tapestry:tapestry-hibernate:jar:5.3.6:compile
> >> > [INFO] |  \-
> >> org.apache.tapestry:tapestry-hibernate-core:jar:5.3.6:compile
> >> > [INFO] |     +-
> >> > org.hibernate.javax.persistence:hibernate-jpa-2.0-api:jar:1.0.0.
> >> > Final:compile
> >> > [INFO] |     \- geronimo-spec:geronimo-spec-jta:jar:1.0-M1:runtime
> >> > [INFO] +- junit:junit:jar:4.10:compile
> >> > [INFO] |  \- org.hamcrest:hamcrest-core:jar:1.1:compile
> >> > [INFO] +- org.hibernate:hibernate-search:jar:3.4.2.Final:compile
> >> > [INFO] |  +-
> >> > org.hibernate:hibernate-search-analyzers:jar:3.4.2.Final:compile
> >> > [INFO] |  |  +- org.apache.lucene:lucene-analyzers:jar:3.1.0:compile
> >> > [INFO] |  |  \- org.apache.solr:solr-analysis-extras:jar:3.1.0:compile
> >> > [INFO] |  |     +- org.apache.solr:solr-core:jar:3.1.0:compile
> >> > [INFO] |  |     |  +- org.apache.solr:solr-solrj:jar:3.1.0:compile
> >> > [INFO] |  |     |  +-
> >> > org.apache.lucene:lucene-highlighter:jar:3.1.0:compile
> >> > [INFO] |  |     |  +-
> org.apache.lucene:lucene-memory:jar:3.1.0:compile
> >> > [INFO] |  |     |  +- org.apache.lucene:lucene-misc:jar:3.1.0:compile
> >> > [INFO] |  |     |  +-
> org.apache.lucene:lucene-spatial:jar:3.1.0:compile
> >> > [INFO] |  |     |  +-
> >> > org.apache.lucene:lucene-spellchecker:jar:3.1.0:compile
> >> > [INFO] |  |     |  \-
> org.apache.solr:solr-commons-csv:jar:3.1.0:compile
> >> > [INFO] |  |     +- org.apache.lucene:lucene-smartcn:jar:3.1.0:compile
> >> > [INFO] |  |     \- org.apache.lucene:lucene-stempel:jar:3.1.0:compile
> >> > [INFO] |  +- org.hibernate:hibernate-core:jar:3.6.10.Final:compile
> >> > [INFO] |  |  +- antlr:antlr:jar:2.7.6:compile
> >> > [INFO] |  |  +- dom4j:dom4j:jar:1.6.1:compile
> >> > [INFO] |  |  \- javax.transaction:jta:jar:1.1:compile
> >> > [INFO] |  +-
> >> > org.hibernate:hibernate-commons-annotations:jar:3.2.0.Final:compile
> >> >
> >> > [INFO] |  +- org.apache.lucene:lucene-core:jar:3.1.0:compile
> >> > [INFO] |  \- org.slf4j:slf4j-api:jar:1.6.1:compile
> >> > [INFO] +- org.got5:tapestry5-jquery:jar:3.3.3:compile
> >> > [INFO] |  +- org.apache.tapestry:tapestry-upload:jar:5.3.6:compile
> >> > [INFO] |  |  \- commons-io:commons-io:jar:2.0.1:compile
> >> > [INFO] |  +- commons-fileupload:commons-fileupload:jar:1.2.2:compile
> >> > [INFO] |  \- commons-lang:commons-lang:jar:2.6:compile
> >> > [INFO] +- javax.servlet:servlet-api:jar:2.5:provided (scope not
> updated
> >> to
> >> > compi
> >> > le)
> >> > [INFO] +- commons-configuration:commons-configuration:jar:1.6:compile
> >> > [INFO] |  +- commons-collections:commons-collections:jar:3.2.1:compile
> >> > [INFO] |  +- commons-logging:commons-logging:jar:1.1.1:compile
> >> > [INFO] |  +- commons-digester:commons-digester:jar:1.8:compile
> >> > [INFO] |  \-
> commons-beanutils:commons-beanutils-core:jar:1.8.0:compile
> >> > [INFO] +- mysql:mysql-connector:jar:5.1.6:compile
> >> > [INFO] +- commons-validator:commons-validator:jar:1.3.1:compile
> >> > [INFO] |  \- commons-beanutils:commons-beanutils:jar:1.7.0:compile
> >> > [INFO] \- oro:oro:jar:2.0.8:compile
> >> > [INFO]
> >> >
> ------------------------------------------------------------------------
> >> >
> >> >
> >> > On Mon, Apr 29, 2013 at 1:13 PM, Dmitry Gusev <dmitry.gu...@gmail.com
> >> > >wrote:
> >> >
> >> > > Lenny is right, you have some jars in your classpath that
> conflicting
> >> > with
> >> > > tomcat's libraries.
> >> > >
> >> > > Can you show output of "mvn dependency:tree" or "gradle
> dependencies"
> >> ?
> >> > >
> >> > > On Mon, Apr 29, 2013 at 9:04 PM, Lenny Primak <
> lpri...@hope.nyc.ny.us
> >> > > >wrote:
> >> > >
> >> > > > Sounds like you are mixing up your dependencies.  Perhaps an
> >> > incompatible
> >> > > > or duplicated version
> >> > > > of some JARs somewhere.  Sorry I can't be anymore specific.
> >> > > >
> >> > > > On Apr 29, 2013, at 1:00 PM, George Christman wrote:
> >> > > >
> >> > > > > Hi everyone, I'm now getting back to this issue and I'd like to
> >> say I
> >> > > > > honestly still don't understand it. I posted my config on stack
> >> > > overflow
> >> > > > > with a little more detail. If any tapestry tomcat users would
> >> like to
> >> > > > take
> >> > > > > a look at it and tell me what I might be doing wrong, I'd
> >> appreciate
> >> > > it.
> >> > > > > Thanks
> >> > > > >
> >> > > > >
> >> > > >
> >> > >
> >> >
> >>
> http://stackoverflow.com/questions/16284005/how-to-configure-tapestry5-hibernate-tomcat7-jndi-mysql
> >> > > > >
> >> > > > >
> >> > > > > On Tue, Mar 26, 2013 at 7:54 AM, Dmitry Gusev <
> >> > dmitry.gu...@gmail.com
> >> > > > >wrote:
> >> > > > >
> >> > > > >> I don't like to use server.xml for JNDI configuration for
> several
> >> > > > reasons,
> >> > > > >> but the main is that JDBC driver classes should be on server
> >> > > classpath,
> >> > > > >> which means you have to manually put them there.
> >> > > > >> Which personally I don't like because driver jar usually
> >> specified
> >> > at
> >> > > > >> pom.xml/build.gradle and this is simply not that DRY.
> >> > > > >>
> >> > > > >> And also this is not recommended by tomcat team and here's why:
> >> > > > >>
> >> > > > >>
> >> > > >
> >> > >
> >> >
> >>
> http://tomcat.apache.org/tomcat-7.0-doc/config/context.html#Defining_a_context
> >> > > > >>
> >> > > > >> What I prefer to do is to create context file (ROOT context at
> >> this
> >> > > > >> example) at
> >> ./apache-tomcat-7.0.35/conf/Catalina/localhost/ROOT.xml
> >> > > with
> >> > > > >> the following content:
> >> > > > >>
> >> > > > >> <?xml version="1.0" encoding="UTF-8"?>
> >> > > > >> <Context>
> >> > > > >>    <Loader delegate="true"/>
> >> > > > >>
> >> > > > >>    <Resource name="jdbc/xxx-db"
> >> > > > >>        type="javax.sql.DataSource"
> >> > > > >>        auth="Container"
> >> > > > >>        maxActive="100" maxIdle="30" maxWait="10000"
> >> > > > >>        driverClassName="org.postgresql.Driver"
> >> > > > >>        url="jdbc:postgresql://localhost/xxx"
> >> > > > >>        username="xxx" />
> >> > > > >>
> >> > > > >> </Context>
> >> > > > >>
> >> > > > >> For several recent projects I found it convenient to also
> develop
> >> > with
> >> > > > >> Tomcat using Sysdeo Eclipse Plugin.
> >> > > > >> For this to work there I have to put content of /Context node
> >> into
> >> > > > "Extra
> >> > > > >> information" textarea at Project Properties -> Tomcat.
> >> > > > >>
> >> > > > >> Though, I agree its more difficult to setup Tomcat plugin than
> >> Jetty
> >> > > in
> >> > > > >> Eclipse, but when you did this once -- every other projects
> will
> >> be
> >> > > > easier
> >> > > > >> to setup. And you usually might want to have exactly the same
> web
> >> > > > container
> >> > > > >> that will be in production if you use, say, web sockets API.
> >> > > > >>
> >> > > > >> // PS: Sorry for offtopic
> >> > > > >>
> >> > > > >> On Tue, Mar 26, 2013 at 3:28 PM, Barry Books <trs...@gmail.com
> >
> >> > > wrote:
> >> > > > >>
> >> > > > >>> I also host on Amazon with Tomcat and develop with Jetty.
> >> > > > >>>
> >> > > > >>> Hibernate just gets the datasource from the container. When
> >> running
> >> > > > >>> locally that's Jetty and Jetty reads the jetty-web.xml file to
> >> > build
> >> > > > >>> the connection. When deployed under Tomcat that would most
> >> likely
> >> > be
> >> > > > >>> the server.xml file in the Tomcat conf directory. Tomcat
> >> requires a
> >> > > > >>> mapping between the server.xml configurations and each web
> app.
> >> I
> >> > do
> >> > > > >>> this by creating a META-INF/context.xml file in the project.
> >> When
> >> > > > >>> Tomcat deploys the app it will pick up that file and use the
> >> > mapping
> >> > > > >>> you provide. The contents would be something like
> >> > > > >>>
> >> > > > >>> <?xml version="1.0" encoding="UTF-8"?>
> >> > > > >>> <Context>
> >> > > > >>> <ResourceLink name="jdbc/wind" global="jdbc/wind"
> >> > > > >>> type="javax.sql.DataSource"/>
> >> > > > >>> </Context>
> >> > > > >>>
> >> > > > >>>
> >> > ---------------------------------------------------------------------
> >> > > > >>> To unsubscribe, e-mail: users-unsubscr...@tapestry.apache.org
> >> > > > >>> For additional commands, e-mail:
> users-h...@tapestry.apache.org
> >> > > > >>>
> >> > > > >>>
> >> > > > >>
> >> > > > >>
> >> > > > >> --
> >> > > > >> Dmitry Gusev
> >> > > > >>
> >> > > > >> AnjLab Team
> >> > > > >> http://anjlab.com
> >> > > > >>
> >> > > > >
> >> > > > >
> >> > > > >
> >> > > > > --
> >> > > > > George Christman
> >> > > > > www.CarDaddy.com
> >> > > > > P.O. Box 735
> >> > > > > Johnstown, New York
> >> > > >
> >> > > >
> >> > > >
> >> ---------------------------------------------------------------------
> >> > > > To unsubscribe, e-mail: users-unsubscr...@tapestry.apache.org
> >> > > > For additional commands, e-mail: users-h...@tapestry.apache.org
> >> > > >
> >> > > >
> >> > >
> >> > >
> >> > > --
> >> > > Dmitry Gusev
> >> > >
> >> > > AnjLab Team
> >> > > http://anjlab.com
> >> > >
> >> >
> >> >
> >> >
> >> > --
> >> > George Christman
> >> > www.CarDaddy.com
> >> > P.O. Box 735
> >> > Johnstown, New York
> >> >
> >>
> >>
> >>
> >> --
> >> Dmitry Gusev
> >>
> >> AnjLab Team
> >> http://anjlab.com
> >>
> >
> >
> >
> > --
> > George Christman
> > www.CarDaddy.com
> > P.O. Box 735
> > Johnstown, New York
> >
> >
>
>
> --
> George Christman
> www.CarDaddy.com
> P.O. Box 735
> Johnstown, New York
>



-- 
Dmitry Gusev

AnjLab Team
http://anjlab.com

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