FWIW:
I've had similar situations arise (we've never found a reason why, but
it happens far less frequently since we updated all our Tomcat
installations to a more recent release) on AS/400s. I responded to it by
rewriting our shutdown CL program so that if a normal shutdown fails to
bring Tomcat down within a specified timeout, it simply finds and abends
the CATALINA job.
--
JHHL
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