Admittedly grasping at straws here, but does an IPv6 ping to localhost work
the same on both boxes, e.g.:
[EMAIL PROTECTED]:~$ ping6 ::1
PING ::1(::1) 56 data bytes
64 bytes from ::1: icmp_seq=1 ttl=64 time=0.047 ms
64 bytes from ::1: icmp_seq=2 ttl=64 time=0.039 ms
--- ::1 ping statistics ---
2 packets transmitted, 2 received, 0% packet loss, time 1001ms
?
On Thu, May 22, 2008 at 12:29 PM, Adam Hardy <[EMAIL PROTECTED]>
wrote:
> Tell you the truth, I can only assume IPv6 stuff is configured to the
> debian etch defaults - although that might have changed between the date I
> installed the no-pause-box and the date I installed the problem box.
>
> no-pause-box:
> eth0 Link encap:Ethernet HWaddr 00:10:DC:79:FF:8F
> inet addr:192.168.0.234 Bcast:192.168.0.255 Mask:255.255.255.0
> inet6 addr: fe80::210:dcff:fe79:ff8f/64 Scope:Link
> UP BROADCAST RUNNING MULTICAST MTU:1500 Metric:1
> RX packets:606692 errors:0 dropped:0 overruns:0 frame:0
> TX packets:598681 errors:0 dropped:0 overruns:0 carrier:0
> collisions:65 txqueuelen:1000
> RX bytes:145074456 (138.3 MiB) TX bytes:44751878 (42.6 MiB)
>
> lo Link encap:Local Loopback
> inet addr:127.0.0.1 Mask:255.0.0.0
> inet6 addr: ::1/128 Scope:Host
> UP LOOPBACK RUNNING MTU:16436 Metric:1
> RX packets:59645 errors:0 dropped:0 overruns:0 frame:0
> TX packets:59645 errors:0 dropped:0 overruns:0 carrier:0
> collisions:0 txqueuelen:0
> RX bytes:5125125 (4.8 MiB) TX bytes:5125125 (4.8 MiB)
>
> box-with-pause (eth1 is LAN, eth2 is internet):
> eth1 Link encap:Ethernet HWaddr 00:18:F3:98:F4:EC
> inet addr:192.168.0.2 Bcast:192.168.0.255 Mask:255.255.255.0
> inet6 addr: fe80::218:f3ff:fe98:f4ec/64 Scope:Link
> UP BROADCAST RUNNING MULTICAST MTU:1500 Metric:1
> RX packets:134101 errors:0 dropped:0 overruns:0 frame:0
> TX packets:138909 errors:0 dropped:0 overruns:0 carrier:0
> collisions:0 txqueuelen:100
> RX bytes:12595060 (12.0 MiB) TX bytes:53461584 (50.9 MiB)
> Base address:0xbc00 Memory:fe8e0000-fe900000
>
> eth2 Link encap:Ethernet HWaddr 00:08:54:0A:B1:E7
> inet addr:86.138.125.132 Bcast:86.138.125.132 Mask:
> 255.255.255.255
> inet6 addr: fe80::208:54ff:fe0a:b1e7/64 Scope:Link
> UP BROADCAST RUNNING MULTICAST MTU:1500 Metric:1
> RX packets:56889 errors:0 dropped:0 overruns:0 frame:0
> TX packets:50695 errors:0 dropped:0 overruns:0 carrier:0
> collisions:0 txqueuelen:1000
> RX bytes:42379708 (40.4 MiB) TX bytes:6543279 (6.2 MiB)
> Interrupt:58 Base address:0xd800
>
> lo Link encap:Local Loopback
> inet addr:127.0.0.1 Mask:255.0.0.0
> inet6 addr: ::1/128 Scope:Host
> UP LOOPBACK RUNNING MTU:16436 Metric:1
> RX packets:3894 errors:0 dropped:0 overruns:0 frame:0
> TX packets:3894 errors:0 dropped:0 overruns:0 carrier:0
> collisions:0 txqueuelen:0
> RX bytes:236606 (231.0 KiB) TX bytes:236606 (231.0 KiB)
>
>
>
> Jim Cox on 22/05/08 14:05, wrote:
>
>> I'm assuming the pause you saw was at the following line?
>> connect(11, {sa_family=AF_INET6, sin6_port=htons(48669),
>> inet_pton(AF_INET6, "::1", &sin6_addr), sin6_flowinfo=0, sin6_scope_id=0},
>> 28) = -1 ETIMEDOUT (Connection timed out)
>>
>> That looks like a connect attempt to the IPv6 loopback address (?) which
>> times out, but the corresponding line from the "no-pause" box seems to do
>> the same without delay. Do you have IPv6 enabled on both boxes, i.e. does
>> the output from "/sbin/ifconfig -a" look similar?
>>
>> On Thu, May 22, 2008 at 8:52 AM, Adam Hardy <[EMAIL PROTECTED]>
>> wrote:
>>
>> I think this is the equivalent part of the strace log from another
>>> machine
>>> on the LAN:
>>>
>>> socket(PF_INET6, SOCK_STREAM, IPPROTO_IP) = 10
>>> listen(10, 1) = 0
>>> getsockname(10, {sa_family=AF_INET6, sin6_port=htons(54792),
>>> inet_pton(AF_INET6, "::", &sin6_addr), sin6_flowinfo=0, sin6_scope_id=0},
>>> [28]) = 0
>>> socket(PF_INET6, SOCK_STREAM, IPPROTO_IP) = 11
>>> connect(11, {sa_family=AF_INET6, sin6_port=htons(54792),
>>> inet_pton(AF_INET6, "::1", &sin6_addr), sin6_flowinfo=0,
>>> sin6_scope_id=0},
>>> 28) = 0
>>> fcntl64(10, F_GETFL) = 0x2 (flags O_RDWR)
>>> fcntl64(10, F_SETFL, O_RDWR|O_NONBLOCK) = 0
>>> accept(10, {sa_family=AF_INET6, sin6_port=htons(51175),
>>> inet_pton(AF_INET6,
>>> "::1", &sin6_addr), sin6_flowinfo=0, sin6_scope_id=0}, [28]) = 12
>>> shutdown(11, 2 /* send and receive */) = 0
>>>
>>>
>>>
>>> Jim Cox on 22/05/08 13:38, wrote:
>>>
>>> Can you compare that output to a capture from the box where you don't
>>>> see
>>>> the pause? I wonder if it's a difference in IPv4/IPv6 configuration
>>>> between
>>>> the boxes...
>>>>
>>>> On Thu, May 22, 2008 at 8:24 AM, Adam Hardy <
>>>> [EMAIL PROTECTED]>
>>>> wrote:
>>>>
>>>> Found it! But I think my knowledge of linux system calls and kernel
>>>>
>>>>> functions is letting me down now. Presumably that is port 48669, which
>>>>> should be open - but is it a DNS call? If it is a DNS call, then the
>>>>> DNS
>>>>> server on the same machine should serve it - piping it out to the net,
>>>>> presumably. But with my DNS server running, which up to now has worked
>>>>> fine,
>>>>> and with the gateway open to allow internet access, tomcat still
>>>>> freezes.
>>>>>
>>>>> So I guess it doesn't matter what the DNS call is for, the problem is
>>>>> that
>>>>> my DNS server is not serving it? I guess that means its config needs
>>>>> tweaking to tell it to serve DNS requests on the loopback interface.
>>>>>
>>>>>
>>>>> socket(PF_INET6, SOCK_STREAM, IPPROTO_IP) = 10
>>>>> listen(10, 1) = 0
>>>>> getsockname(10, {sa_family=AF_INET6, sin6_port=htons(48669),
>>>>> inet_pton(AF_INET6, "::", &sin6_addr), sin6_flowinfo=0,
>>>>> sin6_scope_id=0},
>>>>> [28]) = 0
>>>>> socket(PF_INET6, SOCK_STREAM, IPPROTO_IP) = 11
>>>>> connect(11, {sa_family=AF_INET6, sin6_port=htons(48669),
>>>>> inet_pton(AF_INET6, "::1", &sin6_addr), sin6_flowinfo=0,
>>>>> sin6_scope_id=0},
>>>>> 28) = -1 ETIMEDOUT (Connection timed out)
>>>>> close(10) = 0
>>>>> close(11) = 0
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> Jim Cox on 22/05/08 11:23, wrote:
>>>>>
>>>>> I'd think it's more likely to be timing out while resolving a hostname
>>>>>
>>>>>> via
>>>>>> DNS, but starting tomcat via strace should show you exactly where it
>>>>>> is
>>>>>> pausing.
>>>>>>
>>>>>> On Thu, May 22, 2008 at 5:08 AM, Adam Hardy <
>>>>>> [EMAIL PROTECTED]>
>>>>>> wrote:
>>>>>>
>>>>>> I'm still frustrated by this freeze. Looking at this thread dump, I
>>>>>> can
>>>>>>
>>>>>> see
>>>>>>> it must be the "main" thread that's hanging - but how can I work out
>>>>>>> anything more regarding the problem?
>>>>>>>
>>>>>>> I've done all I can think of to open up the machine it's running on -
>>>>>>> stopping all other unnecessary processes such as the firewall,
>>>>>>> apache,
>>>>>>> the
>>>>>>> DNS server etc.
>>>>>>>
>>>>>>> Could tomcat be waiting in vain for a port? As far as I can tell, it
>>>>>>> should
>>>>>>> be using 8080 and 8005 - nothing else is set up in server.xml. Yet
>>>>>>> these
>>>>>>> ports are free on the machine. Is there a linux tool I can use to
>>>>>>> check
>>>>>>> those ports?
>>>>>>>
>>>>>>> Thanks
>>>>>>> Adam
>>>>>>>
>>>>>>> -------- Original Message --------
>>>>>>> Date: Mon, 19 May 2008 23:13:02 +0100
>>>>>>>
>>>>>>> 19-May-2008 23:04:32 org.apache.tomcat.util.modeler.BaseModelMBean
>>>>>>> preRegister
>>>>>>> FINE: preRegister [EMAIL PROTECTED]
>>>>>>> Catalina:type=Connector,port=8080
>>>>>>> Full thread dump Java HotSpot(TM) Client VM (1.5.0_12-b04 mixed mode,
>>>>>>> sharing):
>>>>>>>
>>>>>>> "Low Memory Detector" daemon prio=1 tid=0x0809e1a8 nid=0xe39 runnable
>>>>>>> [0x00000000..0x00000000]
>>>>>>>
>>>>>>> "CompilerThread0" daemon prio=1 tid=0x0809cc40 nid=0xe38 waiting on
>>>>>>> condition
>>>>>>> [0x00000000..0xb2176828]
>>>>>>>
>>>>>>> "Signal Dispatcher" daemon prio=1 tid=0x0809bd60 nid=0xe37 runnable
>>>>>>> [0x00000000..0x00000000]
>>>>>>>
>>>>>>> "Finalizer" daemon prio=1 tid=0x08094f38 nid=0xe36 in Object.wait()
>>>>>>> [0xb23a0000..0xb23a1140]
>>>>>>> at java.lang.Object.wait(Native Method)
>>>>>>> - waiting on <0x88e609e8> (a java.lang.ref.ReferenceQueue$Lock)
>>>>>>> at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:116)
>>>>>>> - locked <0x88e609e8> (a java.lang.ref.ReferenceQueue$Lock)
>>>>>>> at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:132)
>>>>>>> at
>>>>>>> java.lang.ref.Finalizer$FinalizerThread.run(Finalizer.java:159)
>>>>>>>
>>>>>>> "Reference Handler" daemon prio=1 tid=0x08094240 nid=0xe35 in
>>>>>>> Object.wait()
>>>>>>> [0xb2421000..0xb24220c0]
>>>>>>> at java.lang.Object.wait(Native Method)
>>>>>>> - waiting on <0x88e60910> (a java.lang.ref.Reference$Lock)
>>>>>>> at java.lang.Object.wait(Object.java:474)
>>>>>>> at
>>>>>>> java.lang.ref.Reference$ReferenceHandler.run(Reference.java:116)
>>>>>>> - locked <0x88e60910> (a java.lang.ref.Reference$Lock)
>>>>>>>
>>>>>>> "main" prio=1 tid=0x080557c8 nid=0xe33 runnable
>>>>>>> [0xbf8d6000..0xbf8d8078]
>>>>>>> at java.net.PlainSocketImpl.initProto(Native Method)
>>>>>>> at java.net.PlainSocketImpl.<clinit>(PlainSocketImpl.java:84)
>>>>>>> at java.net.ServerSocket.setImpl(ServerSocket.java:236)
>>>>>>> at java.net.ServerSocket.<init>(ServerSocket.java:178)
>>>>>>> at java.net.ServerSocket.<init>(ServerSocket.java:141)
>>>>>>> at
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> org.apache.tomcat.util.net.DefaultServerSocketFactory.createSocket(DefaultServerSocketFactory.java:50)
>>>>>>> at
>>>>>>> org.apache.tomcat.util.net.JIoEndpoint.init(JIoEndpoint.java:496)
>>>>>>> at
>>>>>>> org.apache.coyote.http11.Http11Protocol.init(Http11Protocol.java:177)
>>>>>>> at
>>>>>>>
>>>>>>> org.apache.catalina.connector.Connector.initialize(Connector.java:1059)
>>>>>>> at
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> org.apache.catalina.core.StandardService.initialize(StandardService.java:677)
>>>>>>> - locked <0x88f6e690> (a
>>>>>>> [Lorg.apache.catalina.connector.Connector;)
>>>>>>> at
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> org.apache.catalina.core.StandardServer.initialize(StandardServer.java:792)
>>>>>>> at org.apache.catalina.startup.Catalina.load(Catalina.java:518)
>>>>>>> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>>>>>>> at
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
>>>>>>> at
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>>>>>>> at java.lang.reflect.Method.invoke(Method.java:585)
>>>>>>> at org.apache.catalina.startup.Bootstrap.load(Bootstrap.java:260)
>>>>>>> at org.apache.catalina.startup.Bootstrap.init(Bootstrap.java:275)
>>>>>>> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>>>>>>> at
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
>>>>>>> at
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>>>>>>> at java.lang.reflect.Method.invoke(Method.java:585)
>>>>>>> at
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> org.apache.commons.daemon.support.DaemonLoader.load(DaemonLoader.java:160)
>>>>>>>
>>>>>>> "VM Thread" prio=1 tid=0x08092e48 nid=0xe34 runnable
>>>>>>>
>>>>>>> "VM Periodic Task Thread" prio=1 tid=0x0809f650 nid=0xe3a waiting on
>>>>>>> condition
>>>>>>>
>>>>>>> Full thread dump Java HotSpot(TM) Client VM (1.5.0_12-b04 mixed mode,
>>>>>>> sharing):
>>>>>>>
>>>>>>> "Low Memory Detector" daemon prio=1 tid=0x0809e1a8 nid=0xe39 runnable
>>>>>>> [0x00000000..0x00000000]
>>>>>>>
>>>>>>> "CompilerThread0" daemon prio=1 tid=0x0809cc40 nid=0xe38 waiting on
>>>>>>> condition
>>>>>>> [0x00000000..0xb2176828]
>>>>>>>
>>>>>>> "Signal Dispatcher" daemon prio=1 tid=0x0809bd60 nid=0xe37 runnable
>>>>>>> [0x00000000..0x00000000]
>>>>>>>
>>>>>>> "Finalizer" daemon prio=1 tid=0x08094f38 nid=0xe36 in Object.wait()
>>>>>>> [0xb23a0000..0xb23a1140]
>>>>>>> at java.lang.Object.wait(Native Method)
>>>>>>> - waiting on <0x88e609e8> (a java.lang.ref.ReferenceQueue$Lock)
>>>>>>> at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:116)
>>>>>>> - locked <0x88e609e8> (a java.lang.ref.ReferenceQueue$Lock)
>>>>>>> at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:132)
>>>>>>> at
>>>>>>> java.lang.ref.Finalizer$FinalizerThread.run(Finalizer.java:159)
>>>>>>>
>>>>>>> "Reference Handler" daemon prio=1 tid=0x08094240 nid=0xe35 in
>>>>>>> Object.wait()
>>>>>>> [0xb2421000..0xb24220c0]
>>>>>>> at java.lang.Object.wait(Native Method)
>>>>>>> - waiting on <0x88e60910> (a java.lang.ref.Reference$Lock)
>>>>>>> at java.lang.Object.wait(Object.java:474)
>>>>>>> at
>>>>>>> java.lang.ref.Reference$ReferenceHandler.run(Reference.java:116)
>>>>>>> - locked <0x88e60910> (a java.lang.ref.Reference$Lock)
>>>>>>>
>>>>>>> "main" prio=1 tid=0x080557c8 nid=0xe33 runnable
>>>>>>> [0xbf8d6000..0xbf8d8078]
>>>>>>> at java.net.PlainSocketImpl.initProto(Native Method)
>>>>>>> at java.net.PlainSocketImpl.<clinit>(PlainSocketImpl.java:84)
>>>>>>> at java.net.ServerSocket.setImpl(ServerSocket.java:236)
>>>>>>> at java.net.ServerSocket.<init>(ServerSocket.java:178)
>>>>>>> at java.net.ServerSocket.<init>(ServerSocket.java:141)
>>>>>>> at
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> org.apache.tomcat.util.net.DefaultServerSocketFactory.createSocket(DefaultServerSocketFactory.java:50)
>>>>>>> at
>>>>>>> org.apache.tomcat.util.net.JIoEndpoint.init(JIoEndpoint.java:496)
>>>>>>> at
>>>>>>> org.apache.coyote.http11.Http11Protocol.init(Http11Protocol.java:177)
>>>>>>> at
>>>>>>>
>>>>>>> org.apache.catalina.connector.Connector.initialize(Connector.java:1059)
>>>>>>> at
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> org.apache.catalina.core.StandardService.initialize(StandardService.java:677)
>>>>>>> - locked <0x88f6e690> (a
>>>>>>> [Lorg.apache.catalina.connector.Connector;)
>>>>>>> at
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> org.apache.catalina.core.StandardServer.initialize(StandardServer.java:792)
>>>>>>> at org.apache.catalina.startup.Catalina.load(Catalina.java:518)
>>>>>>> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>>>>>>> at
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
>>>>>>> at
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>>>>>>> at java.lang.reflect.Method.invoke(Method.java:585)
>>>>>>> at org.apache.catalina.startup.Bootstrap.load(Bootstrap.java:260)
>>>>>>> at org.apache.catalina.startup.Bootstrap.init(Bootstrap.java:275)
>>>>>>> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>>>>>>> at
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
>>>>>>> at
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>>>>>>> at java.lang.reflect.Method.invoke(Method.java:585)
>>>>>>> at
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> org.apache.commons.daemon.support.DaemonLoader.load(DaemonLoader.java:160)
>>>>>>>
>>>>>>> "VM Thread" prio=1 tid=0x08092e48 nid=0xe34 runnable
>>>>>>>
>>>>>>> "VM Periodic Task Thread" prio=1 tid=0x0809f650 nid=0xe3a waiting on
>>>>>>> condition
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> Filip Hanik - Dev Lists on 19/05/08 22:17, wrote:
>>>>>>>
>>>>>>> just do two thread dumps during the freeze
>>>>>>>
>>>>>>> kill -3 <tomcat process id>
>>>>>>>> sleep 5
>>>>>>>> kill -3 <tomcat process id>
>>>>>>>>
>>>>>>>> the thread dump will identify where it is hanging, and it gets
>>>>>>>> output
>>>>>>>> to
>>>>>>>> std.out, by default to catalina.out
>>>>>>>>
>>>>>>>
>
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