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Silvio,

I'm not familiar with biopython, so...

On 5/11/2010 11:36 AM, Silvio Tschapke wrote:
> how do I configure tomcat that it finds the biopython libaries?
> Biopython is not included in jython.jar (which I have moved into the
> tomcat/lib folder.

You probably want this JAR file in your webapp's WEB-INF/lib directory,
rather than in Tomcat's global lib directory.

> Biopython installs itself into the python26/lib/side-packages folder.

Okay, what files does it put in there?

> But how can I tell tomcat about this? There is no python.jar neither a
> biopython.jar file which I could drop into tomcat/lib.

So, is biopython a set of binary libraries like .so files? Are you sure
that it can be used in general with jython? If so, you probably just
have to modify your java.library.path system property.

> While running my Java Servlet which accesses a Jython module, that should
> access a Biopython class, this class cannot be found.

Can you post the stack trace for the CNFE?

- -chris
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