But probably implies local adjustments?  That would explain some
  discrepancies in scale I am seeing.  In theory I should have 5 meters
  per pixel but end up having to say 7 for a better match.

  All these local adjustments will render my automation quite difficult.
  Ideally, I would like to cover an area that is roughly 250km x
  250km...

So probably viking converts lat/lon to UTM, and then just uses the
georef map as if it is the right zone.

I think what you need to do is to find the upper left pixel in WGS84
UTM.

Check out the following program - probably viking should use it at some
point, but it's the standard approach to coordinate conversion in the
open source world:

    http://trac.osgeo.org/proj/

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