Hello again!
My installation on this machine is not going well:(
Now I am stuck with CBLAS, that i have installed as both static and
shared and I try to compile votca now with this:
./build.sh --dev -DEXTERNAL_BOOST=OFF -DFFTW3_LIBRARY=/usr/local/lib/
libfftw3.so -DCBLAS_LIBRARY=/opt/CBLAS/lib/libcblas.so --prefix /opt/
votca tools csg
But get an error:
-- Could NOT find TXT2TAGS (missing: TXT2TAGS_EXECUTABLE)
txt2tags not found, help cmake to find it by setting
TXT2TAGS_EXECUTABLE
-- checking for module 'fftw3'
-- package 'fftw3' not found
CMake Error at CMakeModules/FindCBLAS.cmake:37 (message):
Could not find cblas_dsyrk in /opt/CBLAS/lib/libcblas.so, take a
look at
the error message in /opt/votca/src/tools/CMakeFiles/CMakeError.log
to find
out what was going wrong. If you are using a static lib (.a) make
sure you
have specified all dependencies of libcblas in CBLAS_LIBRARY by hand
(i.e.
-DCBLAS_LIBRARY='/path/to/libcblas.so;/path/to/libm.so') !
Call Stack (most recent call first):
CMakeModules/FindGSL.cmake:24 (find_package)
src/libtools/CMakeLists.txt:25 (find_package)
I am lost here, as I am giving the path by hand, but votca still
doesn't find libcblas.so
when I deffinetly have libcblas.so:
find / -name '*cblas.so*'
/opt/CBLAS/lib/libcblas.so
Am I missing something here? Many thanks.
V
On Aug 19, 5:09 pm, Christoph Junghans <jungh...@votca.org> wrote:
> I had another look at your previous email>cmake -DCMAKE_INSTALL_PREFIX=tools
> -DEXTERNAL_BOOST=OFF -
>
> "-DCMAKE_INSTALL_PREFIX=tools", huh? It seems ${prefix} is empty in>
> ./build.sh --dev -DEXTERNAL_BOOST=OFF -DFFTW3_LIBRARY=/usr/local/lib/
> > libfftw3.so --prefix ${prefix} tools csg
>
> which is why build.sh uses tools as a prefix and builds csg
>
> You can just specify the prefix directly, to be sure.
>
> Christoph
>
> 2011/8/19 Valentina <valentina_erast...@yahoo.co.uk>:
>
> > Yep, I am building with:
> > ./build.sh --dev -DEXTERNAL_BOOST=OFF -DFFTW3_LIBRARY=/usr/local/lib/
> > libfftw3.so --prefix ${prefix} tools csg
>
> > But seems there is no libvotca_boost or libvotca_tools.so
> > [root@xena src]# find * -name *libvotca_boost.so*
> > [root@xena src]# find * -name *libvotca_tools.so*
> > [root@xena src]#
>
> > Thank you, V
>
> > On Aug 19, 4:02 pm, Christoph Junghans <jungh...@votca.org> wrote:
> >> If you build/install votca tools with -DEXTERNAL_BOOST=OFF then there
> >> should be a libvotca_boost.so in the place where libvotca_tools.so is.
>
> >> Christoph
>
> >> 2011/8/19 Valentina <valentina_erast...@yahoo.co.uk>:
>
> >> > Thank you very much, it worked! till next stage (seems I am gifted for
> >> > finding/creating problems)
>
> >> > cmake -DCMAKE_INSTALL_PREFIX=tools -DEXTERNAL_BOOST=OFF -
> >> > DFFTW3_LIBRARY=/usr/local/lib/libfftw3.so -
> >> > DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON .
> >> > -- Could NOT find TXT2TAGS (missing: TXT2TAGS_EXECUTABLE)
> >> > txt2tags not found, help cmake to find it by setting
> >> > TXT2TAGS_EXECUTABLE
> >> > -- checking for module 'libvotca_boost'
> >> > -- package 'libvotca_boost' not found
> >> > CMake Error at /usr/local/share/cmake-2.8/Modules/
> >> > FindPackageHandleStandardArgs.cmake:91 (MESSAGE):
> >> > Could NOT find VOTCA_BOOST (missing: VOTCA_BOOST_LIBRARY
> >> > VOTCA_BOOST_INCLUDE_DIR)
> >> > Call Stack (most recent call first):
> >> > /usr/local/share/cmake-2.8/Modules/
> >> > FindPackageHandleStandardArgs.cmake:252 (_FPHSA_FAILURE_MESSAGE)
> >> > CMakeModules/FindVOTCA_BOOST.cmake:35
> >> > (find_package_handle_standard_args)
> >> > CMakeLists.txt:62 (find_package)
>
> >> > -- Configuring incomplete, errors occurred!
>
> >> > I am wondering if it is related to my votca_tools being in:
>
> >> > [root@xena src]# find / -name *votca_boost*
> >> > /opt/votca/src/tools/src/libboost/libvotca_boost.pc
> >> > /opt/votca/src/tools/src/libboost/libvotca_boost.pc.in
>
> >> > But then I am not too sure if I can set VOTCA_BOOST_LIBRARY and
> >> > VOTCA_BOOST_INCLUDE_DIR to the above paths? What are the libraries
> >> > then?
>
> >> > Many thanks!
> >> > V
>
> >> > On Aug 19, 2:17 pm, Christoph Junghans <jungh...@votca.org> wrote:
> >> >> I just tested Votca with fftw 3.3 and it works here.
>
> >> >> It looks strange to me that in your CMakeError.log it says:
> >> >> "Determining if the function fftw_plan_r2r_1d exists in the /usr/local/
> >> >> lib/libfftw3f.so failed with the following output:"
>
> >> >> 'libfftw3f.so' is the single precision version of fftw, which we do
> >> >> not support, Konstantin is working on that:
> >> >> <http://code.google.com/p/votca/issues/detail?id=105>
>
> >> >> Possible solutions:
> >> >> -build fftw again (make sure you build the double precision version,
> >> >> which is actually the default)
> >> >> $make clean; ./configure --prefix=XXX --enable-shared --disable-float;
> >> >> make; make install
> >> >> -disable fftw support with -DWITH_FFTW=OFF, if you do so csg_boltzmann
> >> >> will lose the ability to calculate autocorrelations.
> >> >> -have a look at CMakeCache.txt to tweak other options related to fftw.
>
> >> >> Cheers,
>
> >> >> Christoph
>
> >> >> 2011/8/19 Valentina <valentina_erast...@yahoo.co.uk>:
>
> >> >> > Thank you:
>
> >> >> > [root@xena src]# more /opt/votca/src/tools/CMakeFiles/CMakeError.log
> >> >> > Determining if the function pthread_create exists in the pthreads
> >> >> > failed with the following output:
> >> >> > Change Dir: /opt/votca/src/tools/CMakeFiles/CMakeTmp
>
> >> >> > Run Build Command:/usr/bin/gmake "cmTryCompileExec/fast"
> >> >> > /usr/bin/gmake -f CMakeFiles/cmTryCompileExec.dir/build.make
> >> >> > CMakeFiles/cmTryCompileExec.dir/build
> >> >> > gmake[1]: Entering directory `/opt/votca/src/tools/CMakeFiles/
> >> >> > CMakeTmp'
> >> >> > /usr/local/bin/cmake -E cmake_progress_report /opt/votca/src/tools/
> >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1
> >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/
> >> >> > CheckFunctionExists.c.o
> >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/
> >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/
> >> >> > cmake-2.8/Modul
> >> >> > es/CheckFunctionExists.c
> >> >> > Linking C executable cmTryCompileExec
> >> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/
> >> >> > cmTryCompileExec.dir/link.txt --verbose=1
> >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create CMakeFiles/
> >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec -
> >> >> > rdynamic -lpthr
> >> >> > eads
> >> >> > /usr/bin/ld: cannot find -lpthreads
> >> >> > collect2: ld returned 1 exit status
> >> >> > gmake[1]: *** [cmTryCompileExec] Error 1
> >> >> > gmake[1]: Leaving directory `/opt/votca/src/tools/CMakeFiles/CMakeTmp'
> >> >> > gmake: *** [cmTryCompileExec/fast] Error 2
>
> >> >> > Determining if the function fftw_plan_r2r_1d exists in the /usr/local/
> >> >> > lib/libfftw3f.so failed with the following output:
> >> >> > Change Dir: /opt/votca/src/tools/CMakeFiles/CMakeTmp
>
> >> >> > Run Build Command:/usr/bin/gmake "cmTryCompileExec/fast"
> >> >> > /usr/bin/gmake -f CMakeFiles/cmTryCompileExec.dir/build.make
> >> >> > CMakeFiles/cmTryCompileExec.dir/build
> >> >> > gmake[1]: Entering directory `/opt/votca/src/tools/CMakeFiles/
> >> >> > CMakeTmp'
> >> >> > /usr/local/bin/cmake -E cmake_progress_report /opt/votca/src/tools/
> >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1
> >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/
> >> >> > CheckFunctionExists.c.o
> >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d -o
> >> >> > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/
> >> >> > local/share/cmake-2.8/Mod
> >> >> > ules/CheckFunctionExists.c
> >> >> > Linking C executable cmTryCompileExec
> >> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/
> >> >> > cmTryCompileExec.dir/link.txt --verbose=1
> >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d
> >> >> > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -o
> >> >> > cmTryCompileExec -rdynamic /usr
> >> >> > /local/lib/libfftw3f.so -Wl,-rpath,/usr/local/lib
> >> >> > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o: In function
> >> >> > `main':
> >> >> > CheckFunctionExists.c:(.text+0x15): undefined reference to
> >> >> > `fftw_plan_r2r_1d'
> >> >> > collect2: ld returned 1 exit status
> >> >> > gmake[1]: *** [cmTryCompileExec] Error 1
> >> >> > gmake[1]: Leaving directory `/opt/votca/src/tools/CMakeFiles/CMakeTmp'
> >> >> > gmake: *** [cmTryCompileExec/fast] Error 2
>
> >> >> > On Aug 19, 1:47 pm, Christoph Junghans <jungh...@votca.org> wrote:
> >> >> >> Hmm, I have not tested fftw 3.3, it must be super new.
> >> >> >> Can you post the part of your CMakeError.log, which contains the
> >> >> >> actual error message?
>
> >> >> >> Cheers,
>
> >> >> >> Christoph
>
> >> >> >> 2011/8/19 Valentina <valentina_erast...@yahoo.co.uk>:
>
> >> >> >> > Ok, the first part works:) but now I am stuck a little further
>
> >> >> >> > I have fftw3, shared, version 3.3, just freshly installed
> >> >> >> > [root@xena fftw-3.3]# find /usr -name '*fftw3*.so' -print
> >> >> >> > /usr/local/lib/libfftw3.so
> >> >> >> > /usr/local/lib/libfftw3f.so
> >> >> >> > /usr/local/lib/libfftw3f_threads.so
>
> >> >> >> > I try to compile against it (even giving a path)
> >> >> >> > [root@xena src]# ./build.sh --dev -DEXTERNAL_BOOST=OFF -
> >> >> >> > DFFTW3_LIBRARY=/usr/local/lib/libfftw3.so --prefix ${prefix} tools
> >> >> >> > csg
>
> >> >> >> > But it seems not to like my fftw and complains:
>
> >> >> >> > cmake -DCMAKE_INSTALL_PREFIX=/opt/votca -DEXTERNAL_BOOST=OFF -
> >> >> >> > DFFTW3_LIBRARY=/usr/local/lib/libfftw3.so -
> >> >> >> > DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON .
> >> >> >> > -- Could NOT find TXT2TAGS (missing: TXT2TAGS_EXECUTABLE)
> >> >> >> > txt2tags not found, help cmake to find it by setting
> >> >> >> > TXT2TAGS_EXECUTABLE
> >> >> >> > -- checking for module 'fftw3'
> >> >> >> > -- package 'fftw3' not found
> >> >> >> > -- Found FFTW3: /usr/local/lib/libfftw3.so
> >> >> >> > CMake Error at CMakeModules/FindFFTW3.cmake:43 (message):
> >> >> >> > Could not find fftw_plan_r2r_1d in /usr/local/lib/libfftw3.so,
> >> >> >> > take
> >> >> >> > a look
> >> >> >> > at the error message in /opt/votca/src/tools/CMakeFiles/
> >> >> >> > CMakeError.log to
> >> >> >> > find out what was going wrong. If you don't have pkg-config
> >> >> >> > installed you
> >> >> >> > will most likely have to set FFTW3_LIBRARY by hand (i.e.
> >> >> >> > -DFFTW3_LIBRARY='/path/to/libfftw3.so') !
> >> >> >> > Call Stack (most recent call first):
> >> >> >> > src/libtools/CMakeLists.txt:11 (find_package)
>
> >> >> >> > -- Configuring incomplete, errors occurred!
>
> >> >> >> > Is there some trick?
>
> >> >> >> > Thank you very much for your continuous help.
> >> >> >> > V
>
> >> >> >> > On Aug 18, 9:39 pm, Valentina <valentina_erast...@yahoo.co.uk>
> >> >> >> > wrote:
> >> >> >> >> Great, thanks!
>
> >> >> >> >> I will try it tomorrow:)
>
> >> >> >> >> V
>
> >> >> >> >> On Aug 18, 8:10 pm, Christoph Junghans <jungh...@votca.org> wrote:
>
> >> >> >> >> > Hi Valentina,
>
> >> >> >> >> > it seems you are a bug hunter ;-)
> >> >> >> >> > I just found the problem in build.sh, just run ./build.sh
> >> >> >> >> > --selfupdate
>
> >> >> >> >> > './build.sh --dev XXX' builds the development version
> >> >> >> >> > while './build.sh XXX' builds the stable version.
>
> >> >> >> >> > Cheers,
>
> >> >> >> >> > Christoph
>
> >> >> >> >> > 2011/8/18 Valentina <valentina_erast...@yahoo.co.uk>:
>
> >> >> >> >> > > Hello again,
>
> >> >> >> >> > > I am currently trying to install VOTCA onto Centos 5.4,
>
> ...
>
> read more »
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