I hotlink the images from http://pubchem.ncbi.nlm.nih.gov/
eg http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5957&loc=ec_rcs
the US version of "the" small chemical compounds database
the EU version would be chebi 
http://www.ebi.ac.uk/chebi/searchFreeText.do?searchString=CHEBI:10789
look at the Molfile it contains (if i remember corretly 3d)
coordinates

On Dec 19, 11:54 pm, mdipierro <mdipie...@cs.depaul.edu> wrote:
> This stuff looks really cool. Do you generate the images? Are hey 2d
> or 3d?
>
> On Dec 19, 2:45 pm, selecta <gr...@delarue-berlin.de> wrote:
>
>
>
> > well this is not directly related but I just launched my first web2py
> > project, wich basicly helps you to semantically annotate source code.
> > I am working in the field of systems biology and we usually have a gap
> > between a mathematical model of a biological process and the
> > biological meaning of the model. This new service helps to close this
> > gap.http://sourceforge.net/projects/aym/<- some nice screenshots 
> > herehttp://www.semanticsbml.org/aym/<- the service
>
> > On Dec 19, 3:35 pm, mdipierro <mdipie...@cs.depaul.edu> wrote:
>
> > > When we will have adaptors for other NoDB backend (like MongoDB), this
> > > will work on that. Right now it works with the supported DBs.
>
> > > On Dec 19, 6:29 am, davidjensen <davidjensen...@gmail.com> wrote:
>
> > > > I will do some testing.
>
> > > > Does this mean there is no need for the mysterious couchdb, mongodb,
> > > > and hadoop, whatever they are?
>
> > > > On Dec 18, 3:30 pm, mdipierro <mdipie...@cs.depaul.edu> wrote:
>
> > > > >http://www.web2py.com/semantic
>
> > > > > We could use some testers.
>
> > > > > Massimo

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