Looks pretty clear that the issue is WeeWX losing its connection to the 
MySQL server. WeeWX will be wanting database access each time it saves 
records to database (every archive interval seconds) and every report cycle 
but I don't see WeeWX doing anything to cause the error.

I guess only you know exactly what is going on with backups on your network 
but I could certainly understand a database backup causing a problem each 
day at 3am. Also, if the MySQL database is on another server that adds 
additional fragility. Does the problem go away if you turn off the backup 
one morning (if you can) or temporarily have WeeWX use a local (to the RPi) 
SQLite or MySQL database? If so perhaps you need to re-jig your backup 
strategy. There have been a number of threads re db backup in weew-user 
over the years, they may provide some insights.

Gary

On Sunday, 14 February 2021 at 07:53:13 UTC+10 sbar...@gmail.com wrote:

> To be complete , the log from messages : 
> Feb 13 02:58:10 weatherpi /weewxd: PiSense: Pressure :1000.5552978515625
> Feb 13 02:58:11 weatherpi /weewxd: PiSense: Lux:0.0
> Feb 13 02:58:24 weatherpi /weewxd: PiSense: Pressure :1000.66787109375
> Feb 13 02:58:25 weatherpi /weewxd: PiSense: Lux:0.0
> Feb 13 02:58:25 weatherpi weewx[4256] INFO weewx.engine: Main loop 
> exiting. Shutting engine down.
> Feb 13 02:58:25 weatherpi weewx[4256] INFO weewx.engine: Shutting down 
> StdReport thread
> Feb 13 02:58:25 weatherpi weewx[4256] INFO user.sdr: shutdown process 
> rtl_433 -M utc -F json
> Feb 13 02:58:35 weatherpi weewx[4256] INFO user.sdr: timed out waiting for 
> stdout-thread
> Feb 13 02:58:45 weatherpi weewx[4256] INFO user.sdr: timed out waiting for 
> stderr-thread
> Feb 13 02:59:46 weatherpi weewx[4256] INFO __main__: retrying...
> Feb 13 02:59:46 weatherpi weewx[4256] INFO __main__: Using configuration 
> file /home/weewx/weewx.conf
> Feb 13 02:59:46 weatherpi weewx[4256] INFO __main__: Debug is 1
> Feb 13 02:59:46 weatherpi weewx[4256] INFO weewx.engine: Loading station 
> type SDR (user.sdr)
> Feb 13 02:59:46 weatherpi weewx[4256] INFO user.sdr: driver version is 0.78
> Feb 13 02:59:46 weatherpi weewx[4256] INFO user.sdr: sensor map is 
> {'windGust': 'wind_gust.0:*.OSWGR800Packet', 'windSpeed': 
> 'wind_speed.0:*.OSWGR800Packet', 'windBatteryStatus': 
> 'battery.0:*.OSWGR800Packet', 'windDir': 'wind_dir.0:*.OSWGR800Packet', 
> 'outHumidity': 'humidity.1:*.OSTHGR810Packet', 'outTemp': 
> 'temperature.1:*.OSTHGR810Packet', 'outTempBatteryStatus': 
> 'battery.1:*.OSTHGR810Packet', 'rain_total': 
> 'rain_total.0:*.OSPCR800Packet', 'rainBatteryStatus': 
> 'battery.0:*.OSPCR800Packet', 'UV': 'uv_index.1:*.OSUV800Packet', 
> 'extraTemp3': 'temperature.1:*.OSBTHGN129Packet', 'extraHumid1': 
> 'humidity.1:*.OSBTHGN129Packet', 'inTempBatteryStatus': 
> 'battery.1:*.OSBTHGN129Packet'}
> Feb 13 02:59:46 weatherpi weewx[4256] INFO user.sdr: deltas is {'rain': 
> 'rain_total', 'strikes': 'strikes_total'}
> Feb 13 02:59:46 weatherpi weewx[4256] INFO user.sdr: startup process 
> 'rtl_433 -M utc -F json'
> Feb 13 02:59:46 weatherpi /weewxd: PiSense: PiSensewx configuration {}
> Feb 13 02:59:46 weatherpi /weewxd: PiSense: I2C port: 1
> Feb 13 02:59:46 weatherpi /weewxd: PiSense: I2C address: 0x5c
> Feb 13 02:59:46 weatherpi /weewxd: PiSense: fallback default units: US
> Feb 13 02:59:46 weatherpi weewx[4256] INFO user.sdr: shutdown process 
> rtl_433 -M utc -F json
> Feb 13 03:00:03 weatherpi weewx[4256] INFO user.sdr: timed out waiting for 
> stderr-thread
> Feb 13 17:29:51 weatherpi weewx[10237] INFO __main__: Initializing weewx 
> version 4.3.0
>
>
>
> On Saturday, February 13, 2021 at 10:48:28 PM UTC+1 sbar...@gmail.com 
> wrote:
>
>> Hi,
>>
>> Ok I can try that.
>>
>> I am running weewx 4.3.0 installed with setup.py.
>>
>> I have a SDR with weewx SDR driver and a custom extension derived from a 
>> BME280 extension that will inject some extra measures in the measure loop.
>> Regarding logs, even though I set debug=1, i find only minimal info in 
>> message and no stacktrace whatsoever.
>>
>> So I run ./bin/weewxd > logfile 2>&1.
>> Below is the crash log from last night:
>>
>> LOOP:   2021-02-13 02:57:20 CET (1613181440) altimeter: 
>> 30.226434601579474, dateTime: 1613181440, extraTemp2: 66.18199999999999, 
>> inDewpoint: 39.600169912207505, inHumidity: 39.51263427734375, inTemp: 
>> 64.80874633789062, maxSolarRad: 0.0, pressure: 29.54738971773132, 
>> radiation: 0.0, rainRate: 0.0, usUnits: 1, windBatteryStatus: 1, windDir: 
>> None, windGust: 0.0, windSpeed: 0.0Traceback (most recent call last):
>>   File "/home/weewx/bin/weedb/mysql.py", line 52, in guarded_fn
>>     return fn(*args, **kwargs)
>>   File "/home/weewx/bin/weedb/mysql.py", line 133, in __init__
>>     db=database_name, **kwargs)
>>   File "/usr/lib/python3/dist-packages/MySQLdb/__init__.py", line 86, in 
>> Connect
>>     return Connection(*args, **kwargs)
>>   File "/usr/lib/python3/dist-packages/MySQLdb/connections.py", line 204, 
>> in __init__
>>     super(Connection, self).__init__(*args, **kwargs2)
>> _mysql_exceptions.OperationalError: (2002, "Can't connect to MySQL server 
>> on 'diskstation' (115)")
>>
>> During handling of the above exception, another exception occurred:
>>
>> Traceback (most recent call last):
>>   File "/home/weewx/bin/weewx/reportengine.py", line 196, in run
>>     obj.start()
>>   File "/home/weewx/bin/weewx/reportengine.py", line 281, in start
>>     self.run()
>>   File "/home/weewx/bin/weewx/cheetahgenerator.py", line 146, in run
>>     self.initExtensions(gen_dict[section_name])
>>   File "/home/weewx/bin/weewx/cheetahgenerator.py", line 190, in 
>> initExtensions
>>     self.search_list_objs.append(class_(self))
>>   File "/home/weewx/bin/weewx/cheetahgenerator.py", line 499, in __init__
>>     archive = self.generator.db_binder.get_manager(binding)
>>   File "/home/weewx/bin/weewx/manager.py", line 534, in get_manager
>>     self.manager_cache[data_binding] = open_manager(manager_dict, 
>> initialize)
>>   File "/home/weewx/bin/weewx/manager.py", line 687, in open_manager
>>     manager_dict['table_name'])
>>   File "/home/weewx/bin/weewx/manager.py", line 129, in open
>>     connection = weedb.connect(database_dict)
>>   File "/home/weewx/bin/weedb/__init__.py", line 92, in connect
>>     return driver_mod.connect(**db_dict)
>>   File "/home/weewx/bin/weedb/mysql.py", line 70, in connect
>>     database_name=database_name, engine=engine, autocommit=autocommit, 
>> **kwargs)
>>   File "/home/weewx/bin/weedb/mysql.py", line 61, in guarded_fn
>>     raise klass(e)
>> weedb.CannotConnectError: (2002, "Can't connect to MySQL server on 
>> 'diskstation' (115)")
>> Traceback (most recent call last):
>>   File "/home/weewx/bin/weedb/mysql.py", line 52, in guarded_fn
>>     return fn(*args, **kwargs)
>>   File "/home/weewx/bin/weedb/mysql.py", line 133, in __init__
>>     db=database_name, **kwargs)
>>   File "/usr/lib/python3/dist-packages/MySQLdb/__init__.py", line 86, in 
>> Connect
>>     return Connection(*args, **kwargs)
>>   File "/usr/lib/python3/dist-packages/MySQLdb/connections.py", line 204, 
>> in __init__
>>     super(Connection, self).__init__(*args, **kwargs2)
>> _mysql_exceptions.OperationalError: (2002, "Can't connect to MySQL server 
>> on 'diskstation' (115)")
>>
>> During handling of the above exception, another exception occurred:
>>
>> Traceback (most recent call last):
>>   File "/home/weewx/bin/weewx/reportengine.py", line 196, in run
>>     obj.start()
>>   File "/home/weewx/bin/weewx/reportengine.py", line 281, in start
>>     self.run()
>>   File "/home/weewx/bin/weewx/imagegenerator.py", line 41, in run
>>     self.genImages(self.gen_ts)
>>   File "/home/weewx/bin/weewx/imagegenerator.py", line 88, in genImages
>>     db_manager = self.db_binder.get_manager(binding)
>>   File "/home/weewx/bin/weewx/manager.py", line 534, in get_manager
>>     self.manager_cache[data_binding] = open_manager(manager_dict, 
>> initialize)
>>   File "/home/weewx/bin/weewx/manager.py", line 687, in open_manager
>>     manager_dict['table_name'])
>>   File "/home/weewx/bin/weewx/manager.py", line 129, in open
>>     connection = weedb.connect(database_dict)
>>   File "/home/weewx/bin/weedb/__init__.py", line 92, in connect
>>     return driver_mod.connect(**db_dict)
>>   File "/home/weewx/bin/weedb/mysql.py", line 70, in connect
>>     database_name=database_name, engine=engine, autocommit=autocommit, 
>> **kwargs)
>>   File "/home/weewx/bin/weedb/mysql.py", line 61, in guarded_fn
>>     raise klass(e)
>> weedb.CannotConnectError: (2002, "Can't connect to MySQL server on 
>> 'diskstation' (115)")
>> Traceback (most recent call last):
>>   File "/home/weewx/bin/weedb/mysql.py", line 52, in guarded_fn
>>     return fn(*args, **kwargs)
>>   File "/home/weewx/bin/weedb/mysql.py", line 133, in __init__
>>     db=database_name, **kwargs)
>>   File "/usr/lib/python3/dist-packages/MySQLdb/__init__.py", line 86, in 
>> Connect
>>     return Connection(*args, **kwargs)
>>   File "/usr/lib/python3/dist-packages/MySQLdb/connections.py", line 204, 
>> in __init__
>>     super(Connection, self).__init__(*args, **kwargs2)
>> _mysql_exceptions.OperationalError: (2002, "Can't connect to MySQL server 
>> on 'diskstation' (115)")
>>
>> During handling of the above exception, another exception occurred:
>>
>> Traceback (most recent call last):
>>   File "/home/weewx/bin/weewx/reportengine.py", line 196, in run
>>     obj.start()
>>   File "/home/weewx/bin/weewx/reportengine.py", line 281, in start
>>     self.run()
>>   File "/home/weewx/bin/weewx/cheetahgenerator.py", line 146, in run
>>     self.initExtensions(gen_dict[section_name])
>>   File "/home/weewx/bin/weewx/cheetahgenerator.py", line 190, in 
>> initExtensions
>>     self.search_list_objs.append(class_(self))
>>   File "/home/weewx/bin/weewx/cheetahgenerator.py", line 499, in __init__
>>     archive = self.generator.db_binder.get_manager(binding)
>>   File "/home/weewx/bin/weewx/manager.py", line 534, in get_manager
>>     self.manager_cache[data_binding] = open_manager(manager_dict, 
>> initialize)
>>   File "/home/weewx/bin/weewx/manager.py", line 687, in open_manager
>>     manager_dict['table_name'])
>>   File "/home/weewx/bin/weewx/manager.py", line 129, in open
>>     connection = weedb.connect(database_dict)
>>   File "/home/weewx/bin/weedb/__init__.py", line 92, in connect
>>     return driver_mod.connect(**db_dict)
>>   File "/home/weewx/bin/weedb/mysql.py", line 70, in connect
>>     database_name=database_name, engine=engine, autocommit=autocommit, 
>> **kwargs)
>>   File "/home/weewx/bin/weedb/mysql.py", line 61, in guarded_fn
>>     raise klass(e)
>> weedb.CannotConnectError: (2002, "Can't connect to MySQL server on 
>> 'diskstation' (115)")
>>
>> 0:00:08.384725
>> 1000.589306640625
>> [1000.06640625, 999.97119140625, 1001.36669921875, 1000.1455078125, 
>> 1000.163330078125, 999.9951171875, 1000.04296875, 1000.19921875, 
>> 1001.275146484375, 1001.266845703125]
>> LOOP:   2021-02-13 02:57:28 CET (1613181448) altimeter: 
>> 30.222221545855962, barometer: 30.262156773782465, cloudbase: 
>> 1454.6444807035157, dateTime: 1613181448, dewpoint: 24.9344792686867, 
>> extraTemp2: 66.2, heatindex: 28.58, humidex: 28.58, inDewpoint: 
>> 39.49696677266399, inHumidity: 39.373779296875, inTemp: 64.79432678222656, 
>> maxSolarRad: 0.0, outHumidity: 86.0, outTemp: 28.58, outTempBatteryStatus: 
>> 1, outTempDay: None, outTempNight: 28.58, pressure: 29.543253645019227, 
>> radiation: 0.0, rainRate: 0.0, usUnits: 1
>> 0:00:27.803524
>> 1000.4492431640625
>> [1000.06640625, 999.97119140625, 1001.279296875, 1000.1455078125, 
>> 1000.163330078125, 999.9951171875, 1000.04296875, 1000.19921875, 
>> 1001.275146484375, 1001.266845703125]
>> LOOP:   2021-02-13 02:57:56 CET (1613181476) altimeter: 
>> 30.221958642886392, dateTime: 1613181476, extraTemp2: 66.2, inDewpoint: 
>> 39.50952906952261, inHumidity: 39.3798828125, inTemp: 64.80393981933594, 
>> maxSolarRad: 0.0, pressure: 29.542995546007383, radiation: 
>> 0.016213107638888887, rain: 0.0, rainBatteryStatus: 1, rainRate: 0.0, 
>> rain_total: 86.704, usUnits: 1
>> 0:00:10.993303
>> 1000.4405029296875
>> [1000.06640625, 999.97119140625, 1001.279296875, 1001.29345703125, 
>> 1000.163330078125, 999.9951171875, 1000.04296875, 1000.19921875, 
>> 1001.275146484375, 1001.266845703125]
>> LOOP:   2021-02-13 02:58:06 CET (1613181486) altimeter: 
>> 30.22541163041881, dateTime: 1613181486, extraHumid1: 43.0, extraTemp2: 
>> 66.18199999999999, extraTemp3: 63.5, inDewpoint: 39.55189165879104, 
>> inHumidity: 39.4317626953125, inTemp: 64.81355285644531, 
>> inTempBatteryStatus: 1, maxSolarRad: 0.0, pressure: 29.546385438615417, 
>> radiation: 0.0, rainRate: 0.0, usUnits: 1
>> 0:00:00.313137
>> LOOP:   2021-02-13 02:58:07 CET (1613181487) dateTime: 1613181487, 
>> extraHumid1: 43.0, extraTemp3: 63.5, inTempBatteryStatus: 1, maxSolarRad: 
>> 0.0, rainRate: 0.0, usUnits: 1
>> 0:00:14.156020
>> 1000.5552978515625
>> [1000.06640625, 999.97119140625, 1001.279296875, 1001.29345703125, 
>> 1001.2890625, 999.9951171875, 1000.04296875, 1000.19921875, 
>> 1001.275146484375, 1001.266845703125]
>> LOOP:   2021-02-13 02:58:19 CET (1613181499) altimeter: 
>> 30.228797789343705, dateTime: 1613181499, extraTemp2: 66.18199999999999, 
>> inDewpoint: 39.459679025970544, inHumidity: 39.3890380859375, inTemp: 
>> 64.741455078125, maxSolarRad: 0.0, pressure: 29.54970972505005, radiation: 
>> 0.0, rainRate: 0.0, usUnits: 1, UV: 0.0
>> Traceback (most recent call last):
>>   File "/home/weewx/bin/user/TCS34725.py", line 115, in __init__
>>     self.pwm = GPIO.PWM(18, 1000)
>> RuntimeError: A PWM object already exists for this GPIO channel
>>
>> During handling of the above exception, another exception occurred:
>>
>> Traceback (most recent call last):
>>   File "./bin/weewxd", line 261, in <module>
>>     main()
>>   File "./bin/weewxd", line 148, in main
>>     engine = weewx.engine.StdEngine(config_dict)
>>   File "/home/weewx/bin/weewx/engine.py", line 93, in __init__
>>     self.loadServices(config_dict)
>>   File "/home/weewx/bin/weewx/engine.py", line 161, in loadServices
>>     obj = weeutil.weeutil.get_object(svc)(self, config_dict)
>>   File "/home/weewx/bin/user/PiSensewx.py", line 121, in __init__
>>     self.Light=TCS34725(0X29, debug=False)
>>   File "/home/weewx/bin/user/TCS34725.py", line 122, in __init__
>>     loginf(" Exception during GPIO Init "+ str(Exception))
>> NameError: name 'loginf' is not defined
>>
>> the mysql exception may be linked to the mysql instance nightly backup. I 
>> don't remembet having these on the previous nights.
>>
>> the loginf is not defined (I botched my traces in exception handling), 
>> should have been a print.
>> ;
>> PISenseWX.py is the fancy name I gave to my extension.
>> TCS32725.py is the sample python module provided with the pisense for 
>> lightsensor use.
>>  
>>
>> On Saturday, February 13, 2021 at 7:15:45 PM UTC+1 gjr80 wrote:
>>
>>> Hi,
>>>
>>> Probably easiest if you post a log extract showing the lead up to a 
>>> failure and the actual error trace. Also what version of WeeWX are you 
>>> running and is WeeWX running under python 2 or python 3?
>>>
>>> Gary
>>> On Sunday, 14 February 2021 at 03:39:13 UTC+10 sbar...@gmail.com wrote:
>>>
>>>> Hi, 
>>>>
>>>> My Weewx dies on a daily basis a little before 3AM. The cause for the 
>>>> dying is some not properly handled exception that I need to fix on my own.
>>>>
>>>> However, the faulty code is in a constructor class call by the 
>>>> constructor of my user extension (so I would expect it to only be called 
>>>> once). So the question is : Is there recycling of the user extensions 
>>>> happening daily?
>>>>
>>>> If yes, is there a clean-up method I can implement in my extension to 
>>>> prevent the next constructor call from failing.
>>>>
>>>> Regards,
>>>>
>>>

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