pip update to 5.0.0b17 deletes ~/weewx-data/scripts if it exist, then creates new ~/weewx-data/scripts directory to hold setup-daemon.systemd and setup-daemon.mac. On previous V4 setup.py installs and newer V5 pip installs I have always created a scripts subdirectory within the WeeWX directory to hold custom scripts related to WeeWX. The scripts directory and it's subdirectories were always safe when updating to a new version of WeeWx. I bet I'm not the only user that normally creates a custom scripts directory and will be surprised when their by custom scripts disappear. I guess it's resonable to assume WeeWX has controll of all files under ~/weewx-data/ and user is at own peril by adding custom files. I was just surprised that the existing ~/weewx-data/scripts directory was removed without warning.
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