Mbch331 added a comment.
Found the culprit in
vendor/addwiki/wikibase-api/src/Api/Service/RevisionSaver.php :
// Always clear so that removing elements is possible
$params['clear'] = 'true';
And I can't override it in my code, so the solution has to come from the
addwiki/wikibase-api package.
TASK DETAIL
https://phabricator.wikimedia.org/T243158
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To: Mbch331
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