Ladsgroup added a comment.

  Since jobs also have implicit transaction, the start and end atomic doesn't 
matter much (I know...)
  
  You could potentially:
  
  - make a TRX_AUTOCOMMIT connection or
  - remove the waitForReplication between each batch or
  - make the job, queue another job instead of doing batches all in one job 
(the refreshlinks way).

TASK DETAIL
  https://phabricator.wikimedia.org/T255706

EMAIL PREFERENCES
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To: Ladsgroup
Cc: hoo, Lucas_Werkmeister_WMDE, ItamarWMDE, Ladsgroup, Krinkle, eprodromou, 
aaron, Michael, Aklapper, thcipriani, Danny_Benjafield_WMDE, Astuthiodit_1, 
karapayneWMDE, Invadibot, maantietaja, Akuckartz, darthmon_wmde, Rosalie_WMDE, 
Nandana, Lahi, Gq86, GoranSMilovanovic, QZanden, LawExplorer, _jensen, 
rosalieper, Scott_WUaS, Verdy_p, Wikidata-bugs, aude, Jdforrester-WMF, Mbch331, 
Jay8g
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