That makes sense.  The files are large so I will upload them.
Original base install
http://windows-installer-xml-wix-toolset.687559.n2.nabble.com/file/n6974348/TabWareXiTools8200.wxs
TabWareXiTools8200.wxs 

project for full install for patch (upgrade)
http://windows-installer-xml-wix-toolset.687559.n2.nabble.com/file/n6974348/TabWareXiTools8201.wxs
TabWareXiTools8201.wxs 

Patch project 8200 > 8201
http://windows-installer-xml-wix-toolset.687559.n2.nabble.com/file/n6974348/Patch.wxs
Patch.wxs 

Database fragment
http://windows-installer-xml-wix-toolset.687559.n2.nabble.com/file/n6974348/databasefiles.wxi
databasefiles.wxi 

The wixmst differences file is over 2mg so I wont upload it all, but what is
happening is that I am getting the files in the main directory updated, but
I am not getting the files in the sub folders like Database

\Tabware
     {Files here are updated}
     \Databases
           \BaseData
                 {These fiels are not even touched}

An example is this one database file.  I find it in the diff file in various
locations, but it does not update even when I "force" an update:

...
-<row sourceLineNumber="C:\dev\TabwareInstalls\databasefiles.wxi*47"
sectionId="wix.section.3/wix.section.3"
op="modify"><field>file_twdatabase_11</field><field>comp_twdatabase_0</field><field>zzwinact.txt</field><field
modified="yes">146866</field><field/><field/><field>512</field><field>48</field></row>
...
-<row sourceLineNumber="C:\dev\TabwareInstalls\databasefiles.wxi*47"
sectionId="wix.section.3/wix.section.3"><field>file_twdatabase_11</field><field/><field/><field/><field>dir_DATABASE_basedata_1</field><field>1</field><field
previousData="c:\8.2.0.x\Pro00\DATABASE\basedata\zzwinact.txt">c:\8.2.0.x\Pro01\DATABASE\basedata\zzwinact.txt</field><field/><field>-1</field><field>0</field><field>0</field><field/><field/><field/><field/></row>
...

The database files are added to the proejct via the fragment.  This is why I
am wondering if the fragment, built by paraffin, is not being recognized in
the pyro process.

--
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