Does it help if you hide X11 (from the menu or clover-H) and then unhide 
(select it)?  I seem to recall this worked around some display issues in the 
past.

-- Viv


> On 18 Oct 2015, at 07:03, Graham Gillott <[email protected]> wrote:
> 
> I don’t know how to fix this but I have had this problem on Yosemite also.
> I have 4 monitors and this occasionally happens. I typically are using X11 
> apps through x2go on a remote host so if I quit and restart the session it 
> comes back.
> I had thought that this was something to do with the number of monitors I 
> have especially since the 4th monitor is spanned over two smaller monitors 
> using a matrox unit so I actually have 5 monitors attached. Clearly this is a 
> core bug.
> For any local apps I haven’t had this problem as much and in fact I can’t 
> remember if I have however had problems with the local windows ‘locking’ and 
> being un-resizable.
> 
> kind regards
> 
> Graham
> 
> -
>> On 9 Oct 2015, at 19:19, Haroon <[email protected]> wrote:
>> 
>> After upgrading to El Capitan I began experiencing an issue where any X11 
>> app placed on the second display will disappear after the monitors wake from 
>> sleep.  The apps keep running, and their windows can be seen in mission 
>> control, but there is no way to get to them.  This behavior is occurring 
>> with both the stable and release candidate of XQuartz.
>> 
>> Any advice?
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