Hello Vitaly-- > > I have a couple more questions on this potential: does the thickness > parameter refer to the length of the bilayer, or one of the > monolayers?
If z=0 is the center of the membrane, z=T/2 is a surface boundary. > Also, does the switching function acts outside the > "thickness" parameter, or somewhere before that? For example, if > thickness is set to 20 A, does the "polarity" profile remain constant > at [0-20] A or at some [0-N] range? The switching function is f(z) = z'^n / (1 + z'^n) where z' = 2 |z| / T It is based on Lazaridis, Proteins 52, 176 (2003). Charles _______________________________________________ Xplor-nih mailing list [email protected] https://dcb.cit.nih.gov/mailman/listinfo/xplor-nih
