Please try and share your impressions:
http://webapps.ccpn.ac.uk/acpype/ <http://webapps.ccpn.ac.uk/acpype/>


> On Jul 15, 2016, at 2:04 PM, Val Yu <[email protected]> wrote:
> 
> Hi,
> 
> Is there any method for small molecule parameterization other than Prodrg? 
> That server doesn't give me satisfy parameters and atom naming of it is 
> terrible. I'm afraid simply modifying this parameter to let result fit my 
> expectation is not accepted. It seems that small molecule parameterization is 
> not an easy task, sometimes itself can be published as a paper (with some 
> simulation result). I'm wondering how you make the ligands work? Any 
> suggestion and experiences will be appreciated because I really know little 
> about this and I don't want to do stupid things.
> 
> -- 
> Qinhong Yu
> Ames' Lab
> Department of Chemistry
> UC Davis
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